Factsheet for GSMUA_Achr1P17040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22711	Soybean	nucleus	85.94	87.34
KRH26593	Soybean	nucleus	85.46	86.85
PGSC0003DMT400019171	Potato	cytosol	82.75	83.41
Solyc11g067090.1.1	Tomato	cytosol, nucleus	82.75	83.28
VIT_06s0061g01590.t01	Wine grape	cytosol	78.75	83.0
OQU80719	Sorghum	cytosol	84.98	82.23
Bra019430.1-P	Field mustard	cytosol	81.31	81.83
CDX99192	Canola	cytosol	81.15	81.67
CDY08708	Canola	cytosol	80.99	81.51
TraesCS7A01G277700.1	Wheat	cytosol	84.03	81.17
TraesCS7D01G277600.1	Wheat	nucleus	83.87	81.02
TraesCS7B01G175400.1	Wheat	cytosol	83.87	81.02
AT3G44600.1	Thale cress	cytosol	81.15	80.51
Zm00001d049958_P002	Maize	cytosol	84.03	78.39
HORVU7Hr1G058730.3	Barley	cytosol, mitochondrion, nucleus	83.55	77.25
GSMUA_Achr8P32900_001	Banana	cytosol	12.62	48.17
GSMUA_Achr5P15930_001	Banana	mitochondrion	10.38	27.78
GSMUA_Achr10P...	Banana	endoplasmic reticulum	9.9	26.5
GSMUA_Achr1P22460_001	Banana	cytosol	20.61	21.68
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	11.98	13.27
GSMUA_Achr10P...	Banana	cytosol	11.02	12.45

Protein Annotations

MapMan:18.12.1	Gene3D:2.130.10.10	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G17040_001	EnsemblPlants:GSMUA_Achr1P17040_001	EnsemblPlants:GSMUA_Achr1T17040_001	InterPro:IPR001680
InterPro:IPR002130	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR029000	UniProt:M0S0L2	PFAM:PF00160
PFAM:PF00400	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PFscan:PS50294	PANTHER:PTHR11071
PANTHER:PTHR11071:SF213	SMART:SM00320	SUPFAM:SSF50891	SUPFAM:SSF50978	UniParc:UPI0002949217	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

Peptidylprolyl isomerase domain and WD repeat-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G17040_001]

Coordinates

chr1:-:12715402..12724303

Molecular Weight (calculated)

70564.3 Da

IEP (calculated)

7.184

GRAVY (calculated)

-0.409

Length

626 amino acids

Sequence
(BLAST)

001: MEERGNGNPS SDPPPPTPAE DGEEETMIGP GPALRARSKR PLQFEHAYLD VLPCAHMYEK SYMHRDVVTH VAVSTADFFI TGSVDGHLKF WKKKPLGIEF
101: AKHFRSHLGP IEDLAVSVDG LLCCTISNDR SVKIYDVVNY DMMFMMRLPF VPGAVEWVYR QGDVKAKLAI SDRHSAFVGI YDVRAGSNEP IISKEIHMGP
201: IRVMKYNHIH DVVISADAKG VIEYWCPDNL QFPENGVSFK YKTDTNLFDI AKCKTTVSAI EVSPNGSQFA ITSPDRRIRV FWFKTGKLRR VYDESLEVAQ
301: DLQRSDAPLY RLEAIDFGRR MAVEKEIEKT ENAPQPNAIF DESSNFLIYA TLLGIKIVNL HTNKVARILG KVENNDRFLR IALYQGDKSN KKVRKIPAAA
401: ANANESKEPL TDPTLLCCAF KKHRIYLFSR REPEEPEDAT KGRDVFNEKP PPEELLAVSD LGKAVTSSLP DNVVLHTSLG DIHLRLYPEE CPKTVENFTT
501: HCKNGYYDNL IFHRVIKGFM IQTGDPLGDG TGGQSIWGRE FEDEFHKSLR HDRPFTLSMA NAGPNTNGSQ FFITTVATPW LDNKHTVFGR VVKGMDVVQG
601: IEKVKTDKSD KPYQDVKILN VTVPKL

Best Arabidopsis Sequence Match ( AT3G44600.1 )
(BLAST)

001: MEEESKNGGT TIPTEELAVV AVPPVVEEEE PMVGPGPAPR GKRKRPLQFE QAYLDSLPSA NMYEKSYMHR DVVTHVAVSA AEFFISGSMD GHLKFWKKKG
101: VGIEFAKHFR SHLGPIEGLA VSIDGLLCCT ISNDHAVKIY DVVNYDMMAM IRLPYIPGAV EWVYKQGDVK AKLAVSDRDS LFVHIYDPRS GSNEPIASKE
201: IHMNPIKVMK YNPVSDTMIS GDTKGIIEYW SATTLQFPED EVNFKLKSDT NLFEIIKCKT TISAIEVSPD GKQFSITAPD RRIRVFWFRT GKLRRVYDES
301: LVVAQDLQRS DAPLYRLEAI DFGRRMAVEK ELEKTESAPQ PNAVFDESSN FLIYATFLGI KVINLHTNTV ARILGKVESN ERYLRVALYQ GDQGGKKVRK
401: IPAAAANVNE SKEPLTDPTI LCCAFKKHRI YMFSRREPEE PEDASQGRDV FNEKPAADEL MSVSDIGNSA TTSLPENVIM HTTLGDIHMK LYPEECPKTV
501: ENFTTHCRNG YYDNHLFHRV IRGFMIQTGD PLGDGTGGQS IWGREFEDEF HKSLRHDRPF TLSMANAGPN TNGSQFFITT VATPWLDNKH TVFGRVVKGM
601: DVVQGIEKVK TDKNDRPYQD VKILNVTVPK S

Arabidopsis Description

CYP71Peptidyl-prolyl cis-trans isomerase CYP71 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4D0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.