Factsheet for Solyc02g092380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g082460.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	Solyc04g082460.2.1	AT1G20630.1	21798944
AT5G67530.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT5G67530.1	Solyc11g017300.1.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055240	Potato	cytosol	97.99	97.99
VIT_00s0513g00020.t01	Wine grape	cytosol	45.13	81.27
KRH28354	Soybean	nucleus	81.38	81.24
KRH77127	Soybean	nucleus	80.87	80.74
VIT_07s0129g00040.t01	Wine grape	cytosol	80.54	80.4
GSMUA_Achr1P22460_001	Banana	cytosol	77.52	77.65
EER92686	Sorghum	cytosol	76.01	76.65
AT5G67530.1	Thale cress	cytosol	76.51	76.64
HORVU4Hr1G070330.9	Barley	cytosol	74.5	75.25
CDY36499	Canola	cytosol	75.17	75.04
TraesCS4D01G259800.1	Wheat	cytosol	74.16	74.79
TraesCS4B01G260100.1	Wheat	cytosol	73.99	74.75
Bra024442.1-P	Field mustard	cytosol	74.83	74.71
CDY08725	Canola	cytosol	74.83	74.71
TraesCS4A01G045200.1	Wheat	cytosol	73.83	74.58
Os03t0201100-01	Rice	cytosol	18.46	73.83
Zm00001d028109_P006	Maize	cytosol	75.84	67.97
Solyc08g006090.2.1	Tomato	cytosol, nucleus	14.93	55.62
Solyc09g010190.2.1	Tomato	nucleus	12.25	44.51
Solyc12g089200.1.1	Tomato	nucleus	5.54	44.0
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	4.03	39.34
Solyc12g038030.1.1	Tomato	cytosol	5.54	35.48
Solyc02g061800.2.1	Tomato	cytosol	11.74	23.89
Solyc10g083930.1.1	Tomato	nucleus	8.56	22.17
Solyc09g008410.2.1	Tomato	plastid	8.72	22.03
Solyc11g067090.1.1	Tomato	cytosol, nucleus	22.82	21.86
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	5.7	21.52
Solyc08g062700.2.1	Tomato	nucleus	17.28	20.93
Solyc12g038150.1.1	Tomato	nucleus	5.54	20.0
Solyc12g038010.1.1	Tomato	mitochondrion	6.38	19.29
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	12.08	18.85
Solyc12g038000.1.1	Tomato	nucleus	5.87	16.36
Solyc07g066420.2.1	Tomato	nucleus	12.42	12.61
Solyc12g038120.1.1	Tomato	nucleus	1.68	4.67
Solyc12g038020.1.1	Tomato	cytosol	1.01	3.53

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.40.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000209	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0016853	GO:GO:0019538	GO:GO:0034450	InterPro:IPR002130	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR029000	UniProt:K4BD34	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PFscan:PS51698	PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SMART:SM00504	SUPFAM:SSF50891	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc02g092380.2	EnsemblPlants:Solyc02g092380.2.1	UniParc:UPI0002767F4F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Peptidyl-prolyl cis-trans isomerase CYP65 [Source:Projected from Arabidopsis thaliana (AT5G67530) UniProtKB/Swiss-Prot;Acc:Q9FJX0]

Coordinates

chr2:-:53463455..53468937

Molecular Weight (calculated)

65983.9 Da

IEP (calculated)

7.665

GRAVY (calculated)

-0.574

Length

596 amino acids

Sequence
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEL KTPFKRLPFY CCALTFTPFE DPVCTKDGNV FEIMHIVPYI RKYGRNPVTG APMKQEDLIP LTFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVR TTGNVFCYEA VKELNIKTKN WKELLTDEAF SREDLITIQN PNALDTKVLL DFDHVKKNLK VDDEEIQKMH SDPTYNINIT
201: GDIKQMLKEL GSEKAKEIAL HGGGGNKAQN ERAAALEAIL AARSRIKDDA KTKENGEGTA QQTFSIVDAA SASVHGRSAA AAKAGSTDKT AARIALHMAG
301: ERTPVNAKLV KSRFTTGAAS RSFTSTSYDP VTKNEYEYVK VEKNPKKKGY VQLHTTHGDL NIELHCDITP RACENFITLC EQGYYNGVAF HRNIRNFMIQ
401: GGDPTGTGKG GESIWGKPFK DEVHSKLLHS GRGVVSMANS GPHSNGSQFF ILYKSATHLN FKHTVFGMVV GGLPTLSTME KVPVDDDDRP LEEIKIISVE
501: VYVNPYAELD EEEEKTNDDN KTEDADNEKV GSWYSNPGTG TSEIQAVGSG IGKYLKARAA QADSKTYSDS SLPPISVVKK RKTGSSTAEL KDFSAW

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.