Factsheet for Solyc08g062700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05304	Soybean	nucleus	69.92	69.78
VIT_04s0008g01370.t01	Wine grape	cytosol	68.9	68.07
CDX68936	Canola	nucleus	61.79	65.1
CDX75321	Canola	nucleus	64.63	64.63
Bra011410.1-P	Field mustard	nucleus	64.84	64.57
AT4G33060.1	Thale cress	nucleus	65.45	63.89
TraesCS3A01G209000.1	Wheat	nucleus	60.57	60.2
TraesCS3D01G211900.1	Wheat	nucleus	60.57	59.72
TraesCS3B01G239300.1	Wheat	nucleus	60.57	59.6
EES03161	Sorghum	nucleus	61.38	58.87
Os01t0582400-01	Rice	extracellular	59.15	58.32
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	65.45	56.99
HORVU3Hr1G050400.5	Barley	cytosol, nucleus	43.5	54.73
Zm00001d044297_P002	Maize	nucleus	60.77	54.56
Solyc12g089200.1.1	Tomato	nucleus	7.52	49.33
Solyc09g010190.2.1	Tomato	nucleus	15.24	45.73
Solyc08g006090.2.1	Tomato	cytosol, nucleus	14.43	44.38
Solyc12g038110.1.1	Tomato	endoplasmic reticulum, extracellular	5.28	42.62
Solyc12g038030.1.1	Tomato	cytosol	7.93	41.94
Solyc02g061800.2.1	Tomato	cytosol	15.85	26.62
Solyc12g038150.1.1	Tomato	nucleus	8.33	24.85
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	18.29	23.56
Solyc12g038010.1.1	Tomato	mitochondrion	9.15	22.84
Solyc12g038000.1.1	Tomato	nucleus	9.15	21.03
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	6.5	20.25
Solyc02g092380.2.1	Tomato	nucleus	20.93	17.28
Solyc07g066420.2.1	Tomato	nucleus	20.33	17.04
Solyc10g083930.1.1	Tomato	nucleus	7.72	16.52
Solyc09g008410.2.1	Tomato	plastid	7.72	16.1
Solyc11g067090.1.1	Tomato	cytosol, nucleus	15.65	12.38
Solyc12g038120.1.1	Tomato	nucleus	5.08	11.68
Solyc12g038020.1.1	Tomato	cytosol	3.46	10.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	UniProt:K4CL57	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF152	SUPFAM:SSF50891	EnsemblPlantsGene:Solyc08g062700.2	EnsemblPlants:Solyc08g062700.2.1	UniParc:UPI000276B2B4
SEG:seg	:	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP57 [Source:Projected from Arabidopsis thaliana (AT4G33060) UniProtKB/Swiss-Prot;Acc:Q6Q152]

Coordinates

chr8:-:51788602..51808109

Molecular Weight (calculated)

54987.9 Da

IEP (calculated)

8.692

GRAVY (calculated)

-0.872

Length

492 amino acids

Sequence
(BLAST)

001: MSTVYVLEPP TKGKVVLNTT YGPIDIELWP KEAPKAVRNF VQLCLEGYYD NTIFHRVIKS FLAQGGDPTG TGTGGESIYG GVFPDEFHSR LRFKHRGLVA
101: CAGAGTPNSN ASQFFMTLDR CDFLDKKHTI FGKVTGDSIY NLITLGEVET GKDDRPVDPP PKILSVEVLW NPFEDIVPRA KPAEALPSGV ATEKKDAKQK
201: ATKKLNLLSF GEEAEEEEKE LVAVSSRIRS SHDVLDDPRL LKDGKHDQAL DSSEGKSTRD VQLTIREALG SKKEASRKES EAGFQESLDN SDEDEAGFDA
301: RMRQQILKRR KELGDPTPKQ KLLSENRNAR NRSPSPSRSD AKHDDDQPKV DKLSLKRKGI GSEARAERMA NANTDLQLLS GPERERQLLK QKKRGRKGHE
401: EDMLAKLEKF KAGLSAKANE SANAVKEEEL SDWAAVTLKF TPEPGKDKMS RSEDPNDYVV HDPLLEKGKE KFNKMMAKQK RREREWAGKS LT

Best Arabidopsis Sequence Match ( AT4G33060.1 )
(BLAST)

001: MSTVYVLEPP TKGKVIVNTT HGPIDVELWP KEAPKSVRNF VQLCLEGYFD NTIFHRVIPG FLVQGGDPTG SGTGGDSIYG GVFADEFHSR LRFSHRGIVA
101: MANASSPNSN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIY NLLRLGEVDT SKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKTSEESAA EIKEPPTKPV
201: KKLNLLSFGE EAEEEEKELA VVKQKIKSSH DVLNDPRLLK AEASDKERNA SESKEVLSVR EALNAKKEAA QKDKSFSVSD TVGNSDDDDD GEDETKFDAK
301: MRNQVLSRRK EIGDTPSKPT QKKKSSSLKG REESTQRSDA VSSEDEKPRM EKLSLKKKGI GSEAKAEHME KGDTDLQLYN ASERARQLHK LKKRRLQGNE
401: DSVLAKLEKF KQSISAKPFT SSNEPVVLTS SSEPVDNKEE DLSDWKNVKL KFAPERGKDK MSRRDDPDAY MVVDPLLEKG KEKFNRMQAK QKRREREWSG
501: KSLA

Arabidopsis Description

CYP57Peptidyl-prolyl cis-trans isomerase CYP57 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q152]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.