CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011410.1-P	Field mustard	nucleus	100.0	99.6
CDX68936	Canola	nucleus	91.67	96.57
CDY69933	Canola	cytosol, nucleus	40.45	93.87
AT4G33060.1	Thale cress	nucleus	88.21	86.11
KRH05304	Soybean	nucleus	67.89	67.75
VIT_04s0008g01370.t01	Wine grape	cytosol	65.45	64.66
Solyc08g062700.2.1	Tomato	nucleus	64.63	64.63
Os01t0582400-01	Rice	extracellular	59.55	58.72
TraesCS3B01G239300.1	Wheat	nucleus	59.15	58.2
TraesCS3A01G209000.1	Wheat	nucleus	58.54	58.18
EES03161	Sorghum	nucleus	60.16	57.7
TraesCS3D01G211900.1	Wheat	nucleus	58.13	57.31
Zm00001d044297_P002	Maize	nucleus	59.96	53.83
HORVU3Hr1G050400.5	Barley	cytosol, nucleus	42.28	53.2
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	60.77	52.92
CDX84155	Canola	cytosol	15.24	45.73
CDX75068	Canola	cytosol	15.24	45.73
CDY38037	Canola	mitochondrion, plastid	15.45	39.38
CDY30664	Canola	endoplasmic reticulum, extracellular, nucleus	6.5	34.04
CDY72459	Canola	cytosol, extracellular, plastid	6.1	25.64
CDX83335	Canola	mitochondrion, plastid	7.52	16.02
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	7.52	15.81
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	7.32	15.38
CDY36499	Canola	cytosol	18.5	15.24
CDY08725	Canola	cytosol	18.29	15.08
CDY08708	Canola	cytosol	16.26	12.86
CDX99192	Canola	cytosol	16.26	12.86
CDY10512	Canola	nucleus	20.33	10.08

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078CDX2	EnsemblPlants:CDX75321	ProteinID:CDX75321	ProteinID:CDX75321.1
ncoils:Coil	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00121198001	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF152
SUPFAM:SSF50891	UniParc:UPI0004EDF13B	SEG:seg	:	:	:

Description

BnaA01g03810D

Coordinates

chrLK031804:+:647847..650826

Molecular Weight (calculated)

55272.4 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.858

Length

492 amino acids

Sequence
(BLAST)

001: MSTIYVLEPP TKGKVIVNTT HGPIDIELWP KEAPKSVRNF VQLCLEGYFD DTIFHRVIPG FLVQGGDPTG SGTGGESIYG GVFADEFHSR LRFNHRGIVA
101: MANESSPNTN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIF NLLRLGEIDT GKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKASHAPVD EVKEPPRKPV
201: KKLNLLSFGE EAEEEEKELA AVKQKIKSSH DVLNDPRLLK AESTNKERNA SDSKEVLSVR EALGSKKENA QKSWPVSDPV GHSDDDDDDG DETKFDAKMR
301: NQVLSRRKEM GDIPPKPTQK KKSSSVKAPE ESIKRSDVSS SEDEKPKMEK LSLKKKGIGS EAKAERLENG DADLQLYNAS ERARQLHKLK KRRMQGNEDA
401: VLAKLEKFKQ SISAKPFGSS SEPVDNMEED VSDWKKVKLK FAPEHGKDKM RKEDPDAYVV VDPLLEKGKE KFNRIQAKQK RREREWSGKS LA

Best Arabidopsis Sequence Match ( AT4G33060.1 )
(BLAST)

001: MSTVYVLEPP TKGKVIVNTT HGPIDVELWP KEAPKSVRNF VQLCLEGYFD NTIFHRVIPG FLVQGGDPTG SGTGGDSIYG GVFADEFHSR LRFSHRGIVA
101: MANASSPNSN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIY NLLRLGEVDT SKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKTSEESAA EIKEPPTKPV
201: KKLNLLSFGE EAEEEEKELA VVKQKIKSSH DVLNDPRLLK AEASDKERNA SESKEVLSVR EALNAKKEAA QKDKSFSVSD TVGNSDDDDD GEDETKFDAK
301: MRNQVLSRRK EIGDTPSKPT QKKKSSSLKG REESTQRSDA VSSEDEKPRM EKLSLKKKGI GSEAKAEHME KGDTDLQLYN ASERARQLHK LKKRRLQGNE
401: DSVLAKLEKF KQSISAKPFT SSNEPVVLTS SSEPVDNKEE DLSDWKNVKL KFAPERGKDK MSRRDDPDAY MVVDPLLEKG KEKFNRMQAK QKRREREWSG
501: KSLA

Arabidopsis Description

CYP57Peptidyl-prolyl cis-trans isomerase CYP57 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q152]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.