Factsheet for VIT_04s0008g01370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05304	Soybean	nucleus	70.48	71.2
Solyc08g062700.2.1	Tomato	nucleus	68.07	68.9
CDX68936	Canola	nucleus	62.05	66.17
AT4G33060.1	Thale cress	nucleus	66.27	65.48
CDX75321	Canola	nucleus	64.66	65.45
Bra011410.1-P	Field mustard	nucleus	64.86	65.38
Os01t0582400-01	Rice	extracellular	64.66	64.53
EES03161	Sorghum	nucleus	65.26	63.35
TraesCS3A01G209000.1	Wheat	nucleus	61.85	62.22
TraesCS3B01G239300.1	Wheat	nucleus	61.85	61.6
TraesCS3D01G211900.1	Wheat	nucleus	61.65	61.52
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	67.47	59.47
Zm00001d044297_P002	Maize	nucleus	64.06	58.21
HORVU3Hr1G050400.5	Barley	cytosol, nucleus	44.38	56.52
VIT_08s0007g02900.t01	Wine grape	cytosol	16.06	48.19
VIT_15s0048g01780.t01	Wine grape	cytosol	13.86	43.12
VIT_00s0513g00020.t01	Wine grape	cytosol	15.06	22.66
VIT_07s0129g00040.t01	Wine grape	cytosol	19.88	16.58
VIT_19s0027g01660.t01	Wine grape	nucleus	20.08	15.67
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	7.63	13.43
VIT_06s0061g01590.t01	Wine grape	cytosol	15.66	13.13

Protein Annotations

EntrezGene:100267905	wikigene:100267905	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:CBI20674	ProteinID:CBI20674.3
ncoils:Coil	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	UniProt:D7STS5
EMBL:FN595231	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR002130	InterPro:IPR029000	EntrezGene:LOC100267905	wikigene:LOC100267905	PFAM:PF00160	PRINTS:PR00153
ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF152	SUPFAM:SSF50891	UniParc:UPI00015C8B79
ArrayExpress:VIT_04s0008g01370	EnsemblPlantsGene:VIT_04s0008g01370	EnsemblPlants:VIT_04s0008g01370.t01	unigene:Vvi.3276	RefSeq:XP_002279928	RefSeq:XP_002279928.1
RefSeq:XP_003631808	RefSeq:XP_003631808.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:1119717..1127998

Molecular Weight (calculated)

56550.6 Da

IEP (calculated)

8.070

GRAVY (calculated)

-0.935

Length

498 amino acids

Sequence
(BLAST)

001: MSSVYVSEPP TKGKVIVTTT YGPLDIELWP KEAPKAVRNF VQLCLEGYYD NTIFHRIIKG FLVQGGDPTG SGTGGESIYG SAFADEFHSR LRFNHRGLVA
101: CANAGSPNSN GSQFFISLDR CDWLDRKNTI FGKVTGDSLY NLPRLGDVEI DKNDRPVDPP PKIISVEVLW NPFDDLVPRK TLAKSLPHST NDIDNKDLKK
201: KAVKKLNLLS FGEEAEEEEK ELEAVKQKIK SSHDVLNDPR LLKGEIPSKE LNPSEVKINK DLQLSVREAL SAKKEESWKE SESEFSNFLD HSDDDEANFD
301: ARMRQQILRK RKELDDLPTK QKLNKGNSNL KDHETSTPRS SAETFDDRPK VEKLALRKKG IGSEARAERM AKADADLQLL GEAEQQRQLQ KQKKRRLQGR
401: EDEVLAKLQR FQKKISAKPV ASETESRVEG DEDDDIYSLR GTQLKFTPEP GKDRMSRSDD PNDYVVHDPL LEKGKEKFNK MQAKQKRRER EWAGKSLT

Best Arabidopsis Sequence Match ( AT4G33060.1 )
(BLAST)

001: MSTVYVLEPP TKGKVIVNTT HGPIDVELWP KEAPKSVRNF VQLCLEGYFD NTIFHRVIPG FLVQGGDPTG SGTGGDSIYG GVFADEFHSR LRFSHRGIVA
101: MANASSPNSN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIY NLLRLGEVDT SKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKTSEESAA EIKEPPTKPV
201: KKLNLLSFGE EAEEEEKELA VVKQKIKSSH DVLNDPRLLK AEASDKERNA SESKEVLSVR EALNAKKEAA QKDKSFSVSD TVGNSDDDDD GEDETKFDAK
301: MRNQVLSRRK EIGDTPSKPT QKKKSSSLKG REESTQRSDA VSSEDEKPRM EKLSLKKKGI GSEAKAEHME KGDTDLQLYN ASERARQLHK LKKRRLQGNE
401: DSVLAKLEKF KQSISAKPFT SSNEPVVLTS SSEPVDNKEE DLSDWKNVKL KFAPERGKDK MSRRDDPDAY MVVDPLLEKG KEKFNRMQAK QKRREREWSG
501: KSLA

Arabidopsis Description

CYP57Peptidyl-prolyl cis-trans isomerase CYP57 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q152]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.