Factsheet for VIT_08s0007g02900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67956	Soybean	endoplasmic reticulum, nucleus	92.77	93.9
GSMUA_Achr8P32900_001	Banana	cytosol	89.76	90.85
Solyc09g010190.2.1	Tomato	nucleus	88.55	89.63
PGSC0003DMT400022853	Potato	cytosol	88.55	89.63
Os08t0559400-01	Rice	cytosol, nucleus	88.55	89.63
Bra005297.1-P	Field mustard	cytosol	87.35	88.41
EES14084	Sorghum	cytosol	87.35	88.41
CDX84155	Canola	cytosol	87.35	88.41
CDX75068	Canola	cytosol	87.35	88.41
TraesCS7D01G279100.1	Wheat	cytosol	86.14	87.2
AT2G36130.1	Thale cress	cytosol	86.14	87.2
TraesCS7B01G180900.1	Wheat	cytosol	86.14	87.2
TraesCS7A01G279300.1	Wheat	cytosol, nucleus	84.34	85.37
Zm00001d031937_P001	Maize	cytosol	76.51	72.99
HORVU7Hr1G059320.3	Barley	plastid	85.54	70.65
KRG96215	Soybean	nucleus	90.36	67.87
VIT_15s0048g01780.t01	Wine grape	cytosol	46.39	48.12
VIT_00s0513g00020.t01	Wine grape	cytosol	42.77	21.45
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	27.71	16.25
VIT_04s0008g01370.t01	Wine grape	cytosol	48.19	16.06
VIT_06s0061g01590.t01	Wine grape	cytosol	47.59	13.3
VIT_07s0129g00040.t01	Wine grape	cytosol	43.98	12.23
VIT_19s0027g01660.t01	Wine grape	nucleus	42.17	10.97

Protein Annotations

EntrezGene:100264827	wikigene:100264827	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:CBI30335	ProteinID:CBI30335.3
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	UniProt:D7TJA9	EMBL:FN595991
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	EntrezGene:LOC100264827	wikigene:LOC100264827	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153
ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF213	SUPFAM:SSF50891	UniParc:UPI00015C9DB4
ArrayExpress:VIT_08s0007g02900	EnsemblPlantsGene:VIT_08s0007g02900	EnsemblPlants:VIT_08s0007g02900.t01	unigene:Vvi.20262	RefSeq:XP_002281866	RefSeq:XP_002281866.1
SEG:seg	:	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:D7TJA9]

Coordinates

chr8:+:16959547..16963958

Molecular Weight (calculated)

18280.8 Da

IEP (calculated)

8.690

GRAVY (calculated)

-0.438

Length

166 amino acids

Sequence
(BLAST)

001: MWGSADGGAP EVTLETSMGS FTVELYYKHA PRTCRNFLEL SRRGYYDNVK FHRIIKDFIV QGGDPTGTGR GGESIYGSKF EDEIKPELKH TGAGILSMAN
101: AGPNSNGSQF FITLAPAQSL DGKHTIFGRV CRGMEIIKRL GSVQTDNTDR PIHDVKILRT AVKDLQ

Best Arabidopsis Sequence Match ( AT2G36130.1 )
(BLAST)

001: MSARPEGSPP EVTLETSMGP FTVEMYYKHS PRTCRNFLEL SRRGYYDNVL FHRIVKDFIV QGGDPTGTGR GGESIYGSKF EDEINKELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPQPSL DGKHTIFGRV CRGMEVIKRL GSVQTDNTDR PIHEVKILRT KVID

Arabidopsis Description

CYP18-2Peptidyl-prolyl cis-trans isomerase CYP18-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.