Factsheet for PGSC0003DMT400022853

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010190.2.1	Tomato	nucleus	100.0	100.0
KRH67956	Soybean	endoplasmic reticulum, nucleus	89.02	89.02
VIT_08s0007g02900.t01	Wine grape	cytosol	89.63	88.55
GSMUA_Achr8P32900_001	Banana	cytosol	86.59	86.59
EES14084	Sorghum	cytosol	85.98	85.98
Os08t0559400-01	Rice	cytosol, nucleus	85.98	85.98
Bra005297.1-P	Field mustard	cytosol	84.76	84.76
CDX75068	Canola	cytosol	84.76	84.76
CDX84155	Canola	cytosol	84.76	84.76
TraesCS7D01G279100.1	Wheat	cytosol	84.76	84.76
AT2G36130.1	Thale cress	cytosol	84.15	84.15
TraesCS7B01G180900.1	Wheat	cytosol	84.15	84.15
TraesCS7A01G279300.1	Wheat	cytosol, nucleus	83.54	83.54
Zm00001d031937_P001	Maize	cytosol	75.0	70.69
HORVU7Hr1G059320.3	Barley	plastid	84.76	69.15
KRG96215	Soybean	nucleus	87.8	65.16
PGSC0003DMT400038471	Potato	cytosol	45.73	46.88
PGSC0003DMT400056014	Potato	cytosol	31.71	28.89
PGSC0003DMT400072698	Potato	mitochondrion, plastid	27.44	19.57
PGSC0003DMT400009946	Potato	mitochondrion	27.44	19.07
PGSC0003DMT400069100	Potato	cytosol	31.71	15.16
PGSC0003DMT400019171	Potato	cytosol	49.39	13.04
PGSC0003DMT400055240	Potato	cytosol	44.51	12.25
PGSC0003DMT400011164	Potato	cytosol	12.2	10.81
PGSC0003DMT400011166	Potato	nucleus	18.29	10.27
PGSC0003DMT400043897	Potato	cytoskeleton, cytosol, nucleus	3.05	2.59

Protein Annotations

EntrezGene:102592855	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR002130	InterPro:IPR029000	UniProt:M1AHC0	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400008860	PGSC:PGSC0003DMG400008860
EnsemblPlants:PGSC0003DMT400022853	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF213	SUPFAM:SSF50891	UniParc:UPI000276CAF1	RefSeq:XP_006341078.1	SEG:seg	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400008860]

Coordinates

chr9:+:2361998..2367446

Molecular Weight (calculated)

18176.7 Da

IEP (calculated)

8.694

GRAVY (calculated)

-0.493

Length

164 amino acids

Sequence
(BLAST)

001: MWPSAEGGPP EVTLETSMGS LTLEMYYKQA PRTCRNFIEL ARRGYYDNVK FHRIIKDFIV QGGDPTGTGR GGESIYGQKF EDEINPQLKH TGAGIISMAN
101: AGPNTNGSQF FITLAPAQSL DGKHTIFGRV CRGMEIVKRL GSVQTDNTDR PIHDVRILRT TVKD

Best Arabidopsis Sequence Match ( AT2G36130.1 )
(BLAST)

001: MSARPEGSPP EVTLETSMGP FTVEMYYKHS PRTCRNFLEL SRRGYYDNVL FHRIVKDFIV QGGDPTGTGR GGESIYGSKF EDEINKELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPQPSL DGKHTIFGRV CRGMEVIKRL GSVQTDNTDR PIHEVKILRT KVID

Arabidopsis Description

CYP18-2Peptidyl-prolyl cis-trans isomerase CYP18-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.