Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G009400.2 | Wheat | nucleus | 94.47 | 97.55 |
| HORVU3Hr1G039480.2 | Barley | cytosol, nucleus | 21.74 | 90.16 |
| Os04t0118900-01 | Rice | nucleus | 79.45 | 82.04 |
| EES11769 | Sorghum | nucleus | 70.75 | 75.21 |
| Zm00001d025063_P002 | Maize | cytosol | 69.57 | 65.67 |
| GSMUA_Achr1P03990_001 | Banana | nucleus | 60.08 | 62.04 |
| Zm00001d004477_P005 | Maize | cytosol | 69.96 | 58.8 |
| KRH47859 | Soybean | nucleus | 59.29 | 57.92 |
| PGSC0003DMT400000674 | Potato | nucleus | 54.15 | 57.08 |
| Solyc10g009330.2.1 | Tomato | nucleus | 46.64 | 57.0 |
| Solyc01g096180.2.1 | Tomato | nucleus | 54.94 | 56.73 |
| KRH06424 | Soybean | nucleus | 58.5 | 56.06 |
| AT2G46610.1 | Thale cress | nucleus | 55.34 | 56.0 |
| PGSC0003DMT400048580 | Potato | extracellular, nucleus | 55.73 | 55.95 |
| AT3G61860.1 | Thale cress | nucleus | 57.71 | 55.3 |
| VIT_15s0046g00050.t01 | Wine grape | nucleus | 7.91 | 51.28 |
| CDY22958 | Canola | cytosol | 9.88 | 35.71 |
| CDX71702 | Canola | endoplasmic reticulum, extracellular, nucleus | 37.94 | 34.78 |
| CDX81436 | Canola | cytosol | 9.49 | 34.29 |
Protein Annotations
| MapMan:16.4.6.3 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44257 | PANTHER:PTHR44257:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RS31 | InterPro:RSP31/31A/40/41 | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS2D01G010300 | EnsemblPlants:TraesCS2D01G010300.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:5233489..5236944
Molecular Weight (calculated)
29101.7 Da
IEP (calculated)
10.240
GRAVY (calculated)
-1.116
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPVFVGNLD YDTRHSELDR LFYRYGRIER IDXXXXFAFV YFEDERDGDD AIRALDGYPF GPGRRRLSVE WSRGDRGTRR DDRDGYSKPP VNTKPTKTLF
101: VINFDPINTR VSDLERHFGH FGRISNVRIR KNFAFVQFET QEEATKALDA THLTKLLDRV ISVEYAFRDD SEPGDKYDRP SRGGGYGRPD DSSYRRSVSP
201: MYRRSRPSPD YGRPASPQYG AYGRSRSPVR DRYRSRSPVQ RSRSPAPNRR GYD
101: VINFDPINTR VSDLERHFGH FGRISNVRIR KNFAFVQFET QEEATKALDA THLTKLLDRV ISVEYAFRDD SEPGDKYDRP SRGGGYGRPD DSSYRRSVSP
201: MYRRSRPSPD YGRPASPQYG AYGRSRSPVR DRYRSRSPVQ RSRSPAPNRR GYD
001: MRHVYVGNFD YDTRHSDLER LFSKFGRVKR VDMKSGYAFV YFEDERDAED AIRRTDNTTF GYGRRKLSVE WAKDFQGERG KPRDGKAVSN QRPTKTLFVI
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
Arabidopsis Description
RS31ASerine/arginine-rich splicing factor RS31A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.