CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88795
EER92211
EER94870
EER97037
EER97602
EES10309
EES16196
KXG21829
KXG32406

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61860.1	EER94870	AT1G09140.1	21798944
AT3G61860.1	KXG21829	AT1G09140.1	21798944
AT3G61860.1	KXG32406	AT1G09140.1	21798944
AT3G61860.1	EER88795	AT1G53720.1	16497658
AT3G61860.1	EER97037	AT2G43370.1	15987817
AT3G61860.1	EER92211	AT3G13570.1	18674533
AT3G61860.1	EER97602	AT3G13570.1	18674533
AT3G61860.1	EES10309	AT3G55460.1	18674533
AT3G61860.1	EES16196	AT3G55460.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025063_P002	Maize	cytosol	91.18	80.97
TraesCS2A01G009400.2	Wheat	nucleus	76.47	74.29
Os04t0118900-01	Rice	nucleus	76.47	74.29
HORVU3Hr1G039480.2	Barley	cytosol, nucleus	18.91	73.77
TraesCS2D01G010300.1	Wheat	nucleus	75.21	70.75
Zm00001d004477_P005	Maize	cytosol	87.82	69.44
GSMUA_Achr1P03990_001	Banana	nucleus	61.34	59.59
PGSC0003DMT400000674	Potato	nucleus	60.08	59.58
Solyc10g009330.2.1	Tomato	nucleus	51.26	58.94
KRH47859	Soybean	nucleus	63.03	57.92
Solyc01g096180.2.1	Tomato	nucleus	58.82	57.14
PGSC0003DMT400048580	Potato	extracellular, nucleus	60.08	56.75
KRH06424	Soybean	nucleus	62.6	56.44
AT2G46610.1	Thale cress	nucleus	57.14	54.4
AT3G61860.1	Thale cress	nucleus	58.4	52.65
VIT_15s0046g00050.t01	Wine grape	nucleus	8.4	51.28
EER92984	Sorghum	nucleus	54.2	48.5
EES06200	Sorghum	nucleus	55.04	44.41
CDY22958	Canola	cytosol	12.18	41.43
CDX81436	Canola	cytosol	11.76	40.0
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	35.71	30.8

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	EntrezGene:8065977	UniProt:C5YBS1	EnsemblPlants:EES11769	ProteinID:EES11769
ProteinID:EES11769.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	EMBL:KC425048
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF3	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RS31	InterPro:RSP31/31A/40/41	SMART:SM00360	EnsemblPlantsGene:SORBI_3006G011000	SUPFAM:SSF54928
unigene:Sbi.187	UniParc:UPI0001A871B5	RefSeq:XP_002447441.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:1592211..1595580

Molecular Weight (calculated)

27748.2 Da

IEP (calculated)

10.242

GRAVY (calculated)

-1.015

Length

238 amino acids

Sequence
(BLAST)

001: MRPVFVGNLD YDTRHSELDQ LFYRYGRVER IDMKSGFAFV YFEDERDGND AIRALDGYPF GPGRRRLSVE WSRGDRAARR DGNKPEANTK PTRTLFVINF
101: DPINTRVSDI ERHFAPFGNL SSVRIRKNFA FVQFETLEEA RKALDATHAT TLLDRVISVE YAFRDDSERS DRYDSPRRGG GYGRRGDSPV YRSRPSPDYG
201: RPASPVYGSY DRSPVRDRYR RSPAYRSRSP RVNRRAYD

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.