Factsheet for Zm00001d004477_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11769	Sorghum	nucleus	69.44	87.82
Zm00001d025063_P002	Maize	cytosol	71.76	80.6
HORVU3Hr1G039480.2	Barley	cytosol, nucleus	14.95	73.77
TraesCS2A01G009400.2	Wheat	nucleus	59.47	73.06
Os04t0118900-01	Rice	nucleus	59.14	72.65
TraesCS2D01G010300.1	Wheat	nucleus	58.8	69.96
GSMUA_Achr1P03990_001	Banana	nucleus	47.84	58.78
VIT_15s0046g00050.t01	Wine grape	nucleus	6.98	53.85
Zm00001d048505_P001	Maize	nucleus	43.52	51.37
Zm00001d004425_P001	Maize	cytosol	17.28	42.62

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	EntrezGene:542693	UniProt:A0A1D6EFP5	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM19000.1
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RS31	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI00084278E4
EnsemblPlantsGene:Zm00001d004477	EnsemblPlants:Zm00001d004477_P005	EnsemblPlants:Zm00001d004477_T005	SEG:seg	:	:

Description

Serine/arginine-rich splicing factor RS31A

Coordinates

chr2:+:114362463..114365356

Molecular Weight (calculated)

34580.8 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.597

Length

301 amino acids

Sequence
(BLAST)

001: MRPVFVGNLD YDTRHSELDR LFYRYGRVER IDIKSGLPAL AFPPFAHPLV YLRLRPVLDS ISSYCVPSHL VQYISDYFRL GHLLLIFIVL TCTFTSVGYA
101: FVYFEDERDG NDAIRALDGY PFGPGRRRLS VEWSRGEQAG RRDGNKPEAN TKPTRTLFVI NFDPMNTRVS DIERHFTPFG NISSVRIRKN FAFVQFETME
201: EARKALEATH ATTLLDRVIS VEYAFRDDSE VSDRYGSPRR GGGYGRRGDS PVYRSRPSPD YGRPASPVYG SYDGPGPVRD RYRRSPAYRS RSPPAKRRAY
301: D

Best Arabidopsis Sequence Match ( AT2G46610.4 )
(BLAST)

001: MYMLALLILS FCFLAGYAFV YFEDERDAED AIRRTDNTTF GYGRRKLSVE WAKDFQGERG KPRDGKAVSN QRPTKTLFVI NFDPIRTRER DMERHFEPYG
101: KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR SPEYDRYKGP APYERRKSPD
201: YGRRSSDYGR ARARSPGYDR SRSPIQRARG

Arabidopsis Description

RS31ASerine/arginine-rich splicing factor RS31A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.