Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G009400.2 | Wheat | nucleus | 81.63 | 81.63 |
| TraesCS2D01G010300.1 | Wheat | nucleus | 82.04 | 79.45 |
| HORVU3Hr1G039480.2 | Barley | cytosol, nucleus | 19.59 | 78.69 |
| EES11769 | Sorghum | nucleus | 74.29 | 76.47 |
| Zm00001d025063_P002 | Maize | cytosol | 72.65 | 66.42 |
| GSMUA_Achr1P03990_001 | Banana | nucleus | 63.27 | 63.27 |
| KRH47859 | Soybean | nucleus | 62.86 | 59.46 |
| Solyc10g009330.2.1 | Tomato | nucleus | 50.2 | 59.42 |
| Zm00001d004477_P005 | Maize | cytosol | 72.65 | 59.14 |
| KRH06424 | Soybean | nucleus | 62.86 | 58.33 |
| AT2G46610.1 | Thale cress | nucleus | 59.18 | 58.0 |
| Solyc01g096180.2.1 | Tomato | nucleus | 57.96 | 57.96 |
| PGSC0003DMT400000674 | Potato | nucleus | 56.73 | 57.92 |
| PGSC0003DMT400048580 | Potato | extracellular, nucleus | 59.18 | 57.54 |
| AT3G61860.1 | Thale cress | nucleus | 60.82 | 56.44 |
| Os02t0122800-02 | Rice | nucleus | 60.41 | 53.05 |
| VIT_15s0046g00050.t01 | Wine grape | nucleus | 7.76 | 48.72 |
| CDY22958 | Canola | cytosol | 11.43 | 40.0 |
| CDX81436 | Canola | cytosol | 11.02 | 38.57 |
| CDX71702 | Canola | endoplasmic reticulum, extracellular, nucleus | 40.41 | 35.87 |
Protein Annotations
| MapMan:16.4.6.3 | Gene3D:3.30.70.330 | EntrezGene:4334964 | ProteinID:BAF13975.1 | ProteinID:BAS87637.1 | ProteinID:CAE01291.2 |
| ProteinID:EEE60406.1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| EnsemblPlantsGene:Os04g0118900 | EnsemblPlants:Os04t0118900-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44257 | PANTHER:PTHR44257:SF3 |
| UniProt:Q7XTJ6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RS31 | InterPro:RSP31/31A/40/41 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000021C5FA | RefSeq:XP_015633436.1 | SEG:seg | : | : |
Description
Similar to Arginine/serine-rich splicing factor 1 variant 2. (Os04t0118900-01)
Coordinates
chr4:-:1120673..1124998
Molecular Weight (calculated)
28785.4 Da
IEP (calculated)
10.240
GRAVY (calculated)
-1.082
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPVFVGNLD YDTRHSELDR LFYRYGRIDR IDMKSGFAFV YFEDERDGDE AIRALDGYPF GPGRRRLSVE WSRGDRGSRR DGYSKPPVNT KPTKTLFVIN
101: FDPINTRVTD IERHFEPFGK LSNVRIRRNF AFVQFETQEE ATKALEATHS TKLLDRVISV EYAFRDDTER GDRYDGARGG YGRRDDSPYR RSVSPVYRSR
201: PSPDYGRQRS PVYGSYDRSP VNDRYRSRSP VRRSRSPLAN RRAYD
101: FDPINTRVTD IERHFEPFGK LSNVRIRRNF AFVQFETQEE ATKALEATHS TKLLDRVISV EYAFRDDTER GDRYDGARGG YGRRDDSPYR RSVSPVYRSR
201: PSPDYGRQRS PVYGSYDRSP VNDRYRSRSP VRRSRSPLAN RRAYD
001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP
Arabidopsis Description
RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.