CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
extracellular 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, nucleus
Any Predictor:	endoplasmic reticulum, extracellular, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G039480.2	Barley	cytosol, nucleus	9.78	44.26
VIT_15s0046g00060.t01	Wine grape	endoplasmic reticulum	34.06	41.96
Os04t0118900-01	Rice	nucleus	35.87	40.41
TraesCS2D01G010300.1	Wheat	nucleus	34.78	37.94
TraesCS2A01G009400.2	Wheat	nucleus	32.97	37.14
EES11769	Sorghum	nucleus	30.8	35.71
EER92984	Sorghum	nucleus	34.42	35.71
TraesCS5A01G555800.1	Wheat	nucleus	34.06	34.81
GSMUA_Achr11P...	Banana	extracellular, plastid	34.42	34.8
TraesCS4B01G398900.1	Wheat	nucleus	34.42	34.8
TraesCSU01G114200.1	Wheat	nucleus	33.7	34.44
HORVU4Hr1G088790.4	Barley	nucleus	34.42	34.3
CDX89418	Canola	nucleus	34.78	28.4
CDY57708	Canola	nucleus	34.78	28.32
CDY54084	Canola	nucleus	35.51	28.16
CDY52361	Canola	nucleus	35.14	27.87
CDY32603	Canola	nucleus	35.14	27.87
CDY38892	Canola	nucleus	36.59	25.12
CDX92711	Canola	nucleus	27.9	25.0
CDY22958	Canola	cytosol	1.45	5.71
CDX81436	Canola	cytosol	1.09	4.29

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:A0A078C487	EnsemblPlants:CDX71702	ProteinID:CDX71702	ProteinID:CDX71702.1
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00155386001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RS31
InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE03FD	SEG:seg	:

Description

BnaC08g31720DSerine/arginine-rich splicing factor RS31 [Source:Projected from Arabidopsis thaliana (AT3G61860) UniProtKB/Swiss-Prot;Acc:P92964]

Coordinates

chrLK031795:+:36970..38298

Molecular Weight (calculated)

31753.1 Da

IEP (calculated)

9.940

GRAVY (calculated)

-0.978

Length

276 amino acids

Sequence
(BLAST)

001: METPLHLLYT SLHIYAGFGF VYFEDERDAE DAIRKLHNYR FEKRTLSVEW GRVYIYSVLV FFSRHGDGSY QKPTKTLFVC NFDSFRTKEV DIVEHFQPYG
101: KVINVRMRSN YLFAQFATQE EATKALEATQ RSQILGKVIA VEYGLKDDDE RDDRRGGGSP KRSPSPAGRS PAAYVRGRRS PSAYDRRGRS PSAYDRRGRS
201: PPSAYERRKS PAACERRMSP ADYGHRSPDN GRQRSPSYDR YRSLSPVPRG RKAEEYEKSA EPEATKNACD TMVSRP

Best Arabidopsis Sequence Match ( AT2G46610.2 )
(BLAST)

001: MYTSLHIDAG YAFVYFEDER DAEDAIRRTD NTTFGYGRRK LSVEWAKDFQ GERGKPRDGK AVSNQRPTKT LFVINFDPIR TRERDMERHF EPYGKVLNVR
101: MRRNFAFVQF ATQEDATKAL DSTHNSKLLD KVVSVEYALR EAGEREDRYA GSRRRRSPSP VYRRRPSPDY TRRRSPEYDR YKGPAPYERR KSPDYGRRSS
201: DYGRARARSP GYDRSRSPIQ RARG

Arabidopsis Description

RS31ASerine/arginine-rich splicing factor RS31A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.