Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G114200.1 | Wheat | nucleus | 79.42 | 81.48 |
| TraesCS4B01G398900.1 | Wheat | nucleus | 76.53 | 77.66 |
| TraesCS5A01G555800.1 | Wheat | nucleus | 72.56 | 74.44 |
| EER92984 | Sorghum | nucleus | 64.62 | 67.29 |
| VIT_15s0046g00050.t01 | Wine grape | nucleus | 9.39 | 66.67 |
| Zm00001d048505_P001 | Maize | nucleus | 58.48 | 63.53 |
| GSMUA_Achr11P... | Banana | nucleus | 8.66 | 58.54 |
| HORVU3Hr1G039480.2 | Barley | cytosol, nucleus | 12.64 | 57.38 |
| PGSC0003DMT400000674 | Potato | nucleus | 49.1 | 56.67 |
| Solyc01g096180.2.1 | Tomato | nucleus | 48.38 | 54.69 |
| Solyc10g009330.2.1 | Tomato | nucleus | 40.07 | 53.62 |
| KRH47859 | Soybean | nucleus | 49.82 | 53.28 |
| PGSC0003DMT400048580 | Potato | extracellular, nucleus | 48.38 | 53.17 |
| KRH06424 | Soybean | nucleus | 50.54 | 53.03 |
| AT3G61860.1 | Thale cress | nucleus | 50.18 | 52.65 |
| AT2G46610.1 | Thale cress | nucleus | 45.85 | 50.8 |
| CDY22958 | Canola | cytosol | 10.11 | 40.0 |
| CDX81436 | Canola | cytosol | 10.11 | 40.0 |
| CDX71702 | Canola | endoplasmic reticulum, extracellular, nucleus | 34.3 | 34.42 |
Protein Annotations
| MapMan:16.4.6.3 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:HORVU4Hr1G088790 | EnsemblPlants:HORVU4Hr1G088790.4 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0YPQ4 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44257 | PANTHER:PTHR44257:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RSP31/31A/40/41 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002960B74 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:641090915..641094513
Molecular Weight (calculated)
32892.0 Da
IEP (calculated)
10.200
GRAVY (calculated)
-1.362
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPVFCGNFD YETRQSDLER LFSKYGPIRR IDIKSGYAFV YFQDERDAED AIRRLSNAEF GHSRRRLSVE WSRQEEPVPK NRDRPTGADA KPTRTLFVIN
101: FDPVRTKVVD IERHFQPYGK IANIRIRKNF AFVQYEMQED ASVAVNKTDK STILDRVVTV EYAFRDDDNE RDDRHGSPRQ GRDRYGSPRR GGDRYGSPRR
201: GGDRYGSPKR ANQGRRPYER SPSPRYRRDY SPDYDRRPRY DRQYGAPYGR SRSPVYDRYE RGWMDFEGSQ RKEFQGG
101: FDPVRTKVVD IERHFQPYGK IANIRIRKNF AFVQYEMQED ASVAVNKTDK STILDRVVTV EYAFRDDDNE RDDRHGSPRQ GRDRYGSPRR GGDRYGSPRR
201: GGDRYGSPKR ANQGRRPYER SPSPRYRRDY SPDYDRRPRY DRQYGAPYGR SRSPVYDRYE RGWMDFEGSQ RKEFQGG
001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP
Arabidopsis Description
RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.