Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G260200.1 | Wheat | cytosol | 73.21 | 96.47 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 72.92 | 96.08 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 72.32 | 95.29 |
| KXG32406 | Sorghum | cytosol | 66.07 | 85.71 |
| Zm00001d040672_P013 | Maize | nucleus | 64.58 | 74.06 |
| Bra018581.1-P | Field mustard | cytosol | 49.4 | 71.55 |
| CDY66028 | Canola | cytosol | 50.89 | 67.59 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 57.14 | 67.13 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 55.65 | 64.93 |
| AT1G09140.1 | Thale cress | cytosol | 51.79 | 64.93 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 55.06 | 62.71 |
| Solyc01g099810.2.1 | Tomato | nucleus | 49.11 | 62.5 |
| GSMUA_Achr11P... | Banana | nucleus | 61.9 | 60.12 |
| KRG92904 | Soybean | nucleus | 48.81 | 59.42 |
| CDX91319 | Canola | nucleus | 52.08 | 58.53 |
| KRG96443 | Soybean | nucleus | 53.87 | 57.83 |
| CDX97264 | Canola | nucleus | 52.08 | 57.38 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 52.38 | 57.14 |
| CDY22050 | Canola | nucleus | 52.08 | 56.63 |
| Bra036267.1-P | Field mustard | nucleus | 52.38 | 56.41 |
| Bra018550.1-P | Field mustard | nucleus | 43.75 | 56.32 |
| CDY50385 | Canola | nucleus | 51.49 | 56.17 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 58.04 | 55.71 |
| AT1G02840.1 | Thale cress | nucleus | 50.0 | 55.45 |
| KRH68188 | Soybean | nucleus | 48.81 | 54.85 |
| AT4G02430.4 | Thale cress | nucleus | 47.62 | 54.79 |
| PGSC0003DMT400029666 | Potato | nucleus | 50.89 | 54.29 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 47.02 | 54.11 |
| Solyc09g075090.1.1 | Tomato | nucleus | 47.32 | 52.13 |
| CDX95008 | Canola | nucleus | 48.51 | 51.42 |
| PGSC0003DMT400063701 | Potato | nucleus | 47.62 | 48.48 |
| Os01t0316600-01 | Rice | plastid | 15.18 | 41.13 |
| Solyc06g009060.2.1 | Tomato | nucleus | 30.95 | 39.69 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 22.02 | 24.75 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 27.08 | 24.73 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G064550.7 | EnsemblPlantsGene:HORVU3Hr1G064550 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000B483E10 | UniProt:A0A287LD31 | MapMan:16.4.6.1 | : | : |
Description
No Description!
Coordinates
chrchr3H:+:492772946..492777682
Molecular Weight (calculated)
37865.3 Da
IEP (calculated)
9.996
GRAVY (calculated)
-0.660
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: SFPRGVACGV PKLLDPPPPP LCPAGTSAEN LGTFIHLDFF DRLQPVGFSA SLSRLRRAWP RPNPSVTFLV VPQVVGWWQE TMGRRNSCTI YVGNLPGDIR
101: EREVEDLFYK YGRIVDIDLK IPPRPPGYAF VEFEDPRDAD DAIYGRDGYD FDGYRLRVEL AHGGKAQSYS YDRPSSFSSG RRGGVSRRSE YRVMVDGLPS
201: SASWQDLKDH MRRAGDVCFS DVYREAGATV GIVDYTNYDD MKYAIRKLDG TEFRNAFSRA YIRVREYDAR SRSRSRSLSY SRSRSYSRSV SRSPLPVDER
301: SLSRSRSPVS SVSGKSVSRS PRSRSVSRSA SPARSD
101: EREVEDLFYK YGRIVDIDLK IPPRPPGYAF VEFEDPRDAD DAIYGRDGYD FDGYRLRVEL AHGGKAQSYS YDRPSSFSSG RRGGVSRRSE YRVMVDGLPS
201: SASWQDLKDH MRRAGDVCFS DVYREAGATV GIVDYTNYDD MKYAIRKLDG TEFRNAFSRA YIRVREYDAR SRSRSRSLSY SRSRSYSRSV SRSPLPVDER
301: SLSRSRSPVS SVSGKSVSRS PRSRSVSRSA SPARSD
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRWITV ETLDHLDHNI ISGFL
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRWITV ETLDHLDHNI ISGFL
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.