Factsheet for VIT_15s0046g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0102g00080.t01
VIT_13s0019g01060.t01
VIT_14s0060g02290.t01
VIT_19s0027g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61860.1	VIT_14s0060g02290.t01	AT1G09140.1	21798944
AT3G61860.1	VIT_19s0027g01660.t01	AT1G53720.1	16497658
AT3G61860.1	VIT_05s0102g00080.t01	AT2G43370.1	15987817
AT3G61860.1	VIT_13s0019g01060.t01	AT3G55460.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g009330.2.1	Tomato	nucleus	66.96	72.46
KRH47859	Soybean	nucleus	71.43	61.78
PGSC0003DMT400048580	Potato	extracellular, nucleus	67.86	60.32
PGSC0003DMT400000674	Potato	nucleus	64.29	60.0
Solyc01g096180.2.1	Tomato	nucleus	65.62	60.0
KRH06424	Soybean	nucleus	68.3	57.95
AT3G61860.1	Thale cress	nucleus	65.18	55.3
GSMUA_Achr11P...	Banana	extracellular, plastid	65.62	53.85
AT2G46610.1	Thale cress	nucleus	59.82	53.6
VIT_15s0048g01870.t01	Wine grape	nucleus	54.46	36.97
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	41.96	34.06
VIT_16s0100g00450.t01	Wine grape	nucleus	55.36	25.31
Zm00001d004425_P001	Maize	cytosol	7.59	13.93
VIT_15s0046g00050.t01	Wine grape	nucleus	0.45	2.56

Protein Annotations

EntrezGene:100255266	wikigene:100255266	MapMan:16.4.6.3	Gene3D:3.30.70.330	ProteinID:CBI40588	ProteinID:CBI40588.3
UniProt:D7UCX3	EMBL:FN596755	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100255266	wikigene:LOC100255266	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257
PANTHER:PTHR44257:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RS31	InterPro:RSP31/31A/40/41	SMART:SM00360
SUPFAM:SSF54928	SignalP:SignalP-noTM	TIGR:TC64575	UniParc:UPI0001BE5275	ArrayExpress:VIT_15s0046g00060	EnsemblPlantsGene:VIT_15s0046g00060
EnsemblPlants:VIT_15s0046g00060.t01	unigene:Vvi.1280	RefSeq:XP_002267297	RefSeq:XP_002267297.1	SEG:seg	:

Description

No Description!

Coordinates

chr15:+:17141519..17142919

Molecular Weight (calculated)

26273.7 Da

IEP (calculated)

10.140

GRAVY (calculated)

-0.994

Length

224 amino acids

Sequence
(BLAST)

001: MIIQGLYFFC ASALHISSGF AFVYFEDEHD ADDAIRGLDN IPFGYDRRRL SVEWAKGERG RHREGSRSMA NQRPTKTLFV INFDPIRTRI RDIERHFEPY
101: GKVLHVRIRR NFAFVQYETQ EDATKALECT HMSKILDRVV SVEYALRDDS DKYDSPRRGG YSRRGESPYG RSPSPVNRRG RPSPDYGRAQ SPVYDRYNGP
201: AYERNRSPEY GRYRSRSPVR RSRT

Best Arabidopsis Sequence Match ( AT2G46610.2 )
(BLAST)

001: MYTSLHIDAG YAFVYFEDER DAEDAIRRTD NTTFGYGRRK LSVEWAKDFQ GERGKPRDGK AVSNQRPTKT LFVINFDPIR TRERDMERHF EPYGKVLNVR
101: MRRNFAFVQF ATQEDATKAL DSTHNSKLLD KVVSVEYALR EAGEREDRYA GSRRRRSPSP VYRRRPSPDY TRRRSPEYDR YKGPAPYERR KSPDYGRRSS
201: DYGRARARSP GYDRSRSPIQ RARG

Arabidopsis Description

RS31ASerine/arginine-rich splicing factor RS31A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.