Factsheet for GSMUA_Achr11P17450_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 2
plastid 4
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P17340_001
GSMUA_Achr4P13560_001
GSMUA_Achr8P09080_001
GSMUA_Achr8P10150_001
GSMUA_Achr8P34280_001
GSMUA_Achr9P21660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61860.1	GSMUA_Achr11P...	AT1G09140.1	21798944
AT3G61860.1	GSMUA_Achr8P10150_001	AT1G09140.1	21798944
AT3G61860.1	GSMUA_Achr10P...	AT1G53720.1	16497658
AT3G61860.1	GSMUA_Achr8P09080_001	AT2G43370.1	15987817
AT3G61860.1	GSMUA_Achr4P13560_001	AT3G13570.1	18674533
AT3G61860.1	GSMUA_Achr9P21660_001	AT3G13570.1	18674533
AT3G61860.1	GSMUA_Achr1P17340_001	AT3G55460.1	18674533
AT3G61860.1	GSMUA_Achr8P34280_001	AT3G55460.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g009330.2.1	Tomato	nucleus	50.55	66.67
VIT_15s0046g00060.t01	Wine grape	endoplasmic reticulum	53.85	65.62
GSMUA_Achr1P03990_001	Banana	nucleus	56.41	62.86
KRH47859	Soybean	nucleus	53.11	55.98
PGSC0003DMT400048580	Potato	extracellular, nucleus	51.65	55.95
GSMUA_Achr3P12360_001	Banana	nucleus	42.49	55.77
PGSC0003DMT400000674	Potato	nucleus	48.72	55.42
KRH06424	Soybean	nucleus	53.11	54.92
Solyc01g096180.2.1	Tomato	nucleus	48.35	53.88
AT3G61860.1	Thale cress	nucleus	50.55	52.27
GSMUA_Achr1P03880_001	Banana	nucleus	44.69	50.83
GSMUA_Achr5P10480_001	Banana	nucleus	42.86	48.35
AT2G46610.1	Thale cress	nucleus	43.96	48.0
GSMUA_Achr1P16190_001	Banana	nucleus	24.91	39.08
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	34.8	34.42
Zm00001d004425_P001	Maize	cytosol	7.69	17.21
GSMUA_Achr11P...	Banana	nucleus	1.47	9.76

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr11G17450_001	EnsemblPlants:GSMUA_Achr11P17450_001
EnsemblPlants:GSMUA_Achr11T17450_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0RT25	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RS31
InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002963A61	SEG:seg	:

Description

Arginine/serine-rich-splicing factor RSP31 [Source:GMGC_GENE;Acc:GSMUA_Achr11G17450_001]

Coordinates

chr11:-:19022358..19025071

Molecular Weight (calculated)

31227.4 Da

IEP (calculated)

9.467

GRAVY (calculated)

-0.824

Length

273 amino acids

Sequence
(BLAST)

001: MPCLPTVYHA LPSMNCTLAL FMVKHVQQCL LTLDLTYTTS CFSCHYRRAP FSHSICSSGL QINAGYAFVY FEDERDAGDA IRGLDGIPFG YSRRRLSVEW
101: SRQGDRGPRY HDGSRSTGNT RPTKTLFVIN FDPIRTRVRD IESHFEPYGN ITNVRIRRNF AFVQFETQEE ATTALESTNM SKILDRVVSV EYAFRDDDDR
201: DEMRGSPRRG GHGRRDDSPC GRSGSPGYSR GSPSPDYGRA RSPVYTRDNG FTYDRSRRPD YGRHRSRSPA RRS

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.