Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G065400.2 | Wheat | nucleus | 80.65 | 79.79 |
| TraesCSU01G119700.2 | Wheat | nucleus | 79.57 | 79.0 |
| TraesCS6B01G088500.2 | Wheat | nucleus | 79.57 | 79.0 |
| GSMUA_Achr1P03880_001 | Banana | nucleus | 60.22 | 70.0 |
| GSMUA_Achr3P12360_001 | Banana | nucleus | 51.97 | 69.71 |
| EES06200 | Sorghum | nucleus | 72.4 | 68.47 |
| GSMUA_Achr5P10480_001 | Banana | nucleus | 58.42 | 67.36 |
| GSMUA_Achr1P16190_001 | Banana | nucleus | 41.94 | 67.24 |
| KRH65157 | Soybean | nucleus | 60.22 | 66.67 |
| KRH48257 | Soybean | nucleus | 60.22 | 66.4 |
| Solyc01g091750.2.1 | Tomato | nucleus | 50.9 | 65.14 |
| PGSC0003DMT400043937 | Potato | nucleus | 58.42 | 60.82 |
| Os04t0118900-01 | Rice | nucleus | 53.05 | 60.41 |
| CDX89418 | Canola | nucleus | 62.72 | 51.78 |
| Bra013895.1-P | Field mustard | nucleus | 62.72 | 51.62 |
| CDY57708 | Canola | nucleus | 62.37 | 51.33 |
| CDY52361 | Canola | nucleus | 63.44 | 50.86 |
| Bra010459.1-P | Field mustard | nucleus | 63.44 | 50.86 |
| VIT_15s0048g01870.t01 | Wine grape | nucleus | 59.86 | 50.61 |
| CDY54084 | Canola | nucleus | 63.08 | 50.57 |
| AT5G52040.2 | Thale cress | nucleus | 63.08 | 49.3 |
| Solyc03g026240.2.1 | Tomato | nucleus | 59.5 | 48.4 |
| CDY32603 | Canola | nucleus | 60.22 | 48.28 |
| AT4G25500.4 | Thale cress | nucleus | 60.22 | 48.0 |
| Solyc11g072340.1.1 | Tomato | nucleus | 60.57 | 47.74 |
| KRG91440 | Soybean | nucleus | 60.93 | 45.21 |
| KRH35377 | Soybean | endoplasmic reticulum, nucleus | 60.57 | 45.19 |
| CDY38892 | Canola | nucleus | 62.01 | 43.03 |
| CDX92711 | Canola | nucleus | 46.59 | 42.21 |
| PGSC0003DMT400037012 | Potato | nucleus | 59.14 | 41.56 |
| Bra029146.1-P | Field mustard | nucleus | 62.01 | 41.39 |
| VIT_16s0100g00450.t01 | Wine grape | nucleus | 63.8 | 36.33 |
Protein Annotations
| MapMan:16.4.6.3 | Gene3D:3.30.70.330 | EntrezGene:4328133 | EMBL:AK121372 | ProteinID:BAD07946.1 | ProteinID:BAF07643.1 |
| ProteinID:BAS76725.1 | GO:GO:0000154 | GO:GO:0000179 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008168 | GO:GO:0008649 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0031167 | GO:GO:0032259 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os02g0122800 | EnsemblPlants:Os02t0122800-02 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44257 | PANTHER:PTHR44257:SF1 | UniProt:Q6Z725 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RSP31/31A/40/41 | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000236846 | RefSeq:XP_015626895.1 | SEG:seg |
Description
Similar to Arginine/serine-rich splicing factor. (Os02t0122800-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os02t0122800-02)
Coordinates
chr2:-:1193388..1197056
Molecular Weight (calculated)
32539.4 Da
IEP (calculated)
10.232
GRAVY (calculated)
-1.514
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPVFCGNLD YDARQSEIER LFSKYGRVER VDMKSGFAFV YMEDERDADE AIHRLDRIEF GRKGRRLRVE WTKEDRSGGR RGNSKRSPNN TRPTKTLFVI
101: NFDPINTRTR DLERHFDQYG KISNVRIRRN FAFVQYELQE DATKALEGTN GSTLMDRVIS VEYALRDDDE KRNGYSPERR GRDRSPDRRD YRGRSASPYG
201: RGRERGSPDY GRGRERGSPD YGRGGDRGSP DYHRGASPQG GNKGDERGSP PNNYDRERRE ASPGYDRPRS RSPARYERE
101: NFDPINTRTR DLERHFDQYG KISNVRIRRN FAFVQYELQE DATKALEGTN GSTLMDRVIS VEYALRDDDE KRNGYSPERR GRDRSPDRRD YRGRSASPYG
201: RGRERGSPDY GRGRERGSPD YGRGGDRGSP DYHRGASPQG GNKGDERGSP PNNYDRERRE ASPGYDRPRS RSPARYERE
001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESSPS RSPPAEE
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESSPS RSPPAEE
Arabidopsis Description
ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.