Factsheet for Bra013895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57708	Canola	nucleus	97.94	97.94
CDX89418	Canola	nucleus	95.87	96.15
Bra010459.1-P	Field mustard	nucleus	86.14	83.91
AT4G25500.4	Thale cress	nucleus	81.42	78.86
GSMUA_Achr3P12360_001	Banana	nucleus	42.77	69.71
KRH65157	Soybean	nucleus	49.56	66.67
KRH48257	Soybean	nucleus	49.56	66.4
GSMUA_Achr1P03880_001	Banana	nucleus	46.02	65.0
Solyc01g091750.2.1	Tomato	nucleus	41.3	64.22
GSMUA_Achr5P10480_001	Banana	nucleus	45.72	64.05
Os02t0122800-02	Rice	nucleus	51.62	62.72
GSMUA_Achr1P16190_001	Banana	nucleus	31.56	61.49
PGSC0003DMT400043937	Potato	nucleus	47.2	59.7
TraesCS6B01G088500.2	Wheat	nucleus	49.26	59.43
TraesCSU01G119700.2	Wheat	nucleus	48.97	59.07
TraesCS6A01G065400.2	Wheat	nucleus	48.97	58.87
Bra029146.1-P	Field mustard	nucleus	70.21	56.94
EES06200	Sorghum	nucleus	49.26	56.61
KRH35377	Soybean	endoplasmic reticulum, nucleus	58.7	53.21
KRG91440	Soybean	nucleus	58.7	52.93
Solyc11g072340.1.1	Tomato	nucleus	53.98	51.69
VIT_15s0048g01870.t01	Wine grape	nucleus	48.97	50.3
Solyc03g026240.2.1	Tomato	nucleus	49.26	48.69
PGSC0003DMT400037012	Potato	nucleus	50.74	43.32
VIT_16s0100g00450.t01	Wine grape	nucleus	59.29	41.02

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra013895	EnsemblPlants:Bra013895.1	EnsemblPlants:Bra013895.1-P	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4DBN5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025469FE	SEG:seg	:	:

Description

AT4G25500 (E=4e-111) ATRSP35, ATRSP40, AT-SRP40, RSP35 | ATRSP35; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA01:+:8337526..8339511

Molecular Weight (calculated)

39155.2 Da

IEP (calculated)

10.846

GRAVY (calculated)

-1.535

Length

339 amino acids

Sequence
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGRVER VDMKAGFAFV YMENERDADD AIRGLDRIEF GRKGRRLRVE WTKGERGGDR RSGGGGGSRR SSSSMRPSKT
101: LFVINFDADN TRTRDLERHF ESYGKIVNVR IRRNFAFIQY EEQEDATRAL EATNNSKLMD KVISVEYAMK DDDARGNGQS PDRRRDRSPE RRRRSPSPYK
201: RERGSPDYGR GGSPVAAYRK ERTSPDYGRR RSPSPYKRSR RMSPEYGRDR RGNESPRRRE RVASPNNKRE RRSPDDSPFK KESPKNGGGE VESPRRERSR
301: SSPENGQVES PSSIGRRDSD DGAESPMQKS RSRSPPAEE

Best Arabidopsis Sequence Match ( AT4G25500.4 )
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.