Factsheet for PGSC0003DMT400037012

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g026240.2.1	Tomato	nucleus	59.7	69.1
GSMUA_Achr3P12360_001	Banana	nucleus	34.01	64.9
GSMUA_Achr1P03880_001	Banana	nucleus	39.04	64.58
GSMUA_Achr5P10480_001	Banana	nucleus	38.79	63.64
GSMUA_Achr1P16190_001	Banana	nucleus	27.71	63.22
PGSC0003DMT400043937	Potato	nucleus	40.55	60.07
Os02t0122800-02	Rice	nucleus	41.56	59.14
TraesCSU01G119700.2	Wheat	nucleus	41.56	58.72
TraesCS6B01G088500.2	Wheat	nucleus	41.56	58.72
TraesCS6A01G065400.2	Wheat	nucleus	41.31	58.16
PGSC0003DMT400048580	Potato	extracellular, nucleus	34.51	54.37
PGSC0003DMT400000674	Potato	nucleus	31.74	52.5
EES06200	Sorghum	nucleus	38.54	51.86
CDY57708	Canola	nucleus	44.08	51.62
CDY52361	Canola	nucleus	44.84	51.15
Bra010459.1-P	Field mustard	nucleus	44.84	51.15
AT5G52040.2	Thale cress	nucleus	45.84	50.98
CDX89418	Canola	nucleus	43.32	50.89
Bra013895.1-P	Field mustard	nucleus	43.32	50.74
CDY32603	Canola	nucleus	44.33	50.57
CDY54084	Canola	nucleus	44.08	50.29
AT4G25500.4	Thale cress	nucleus	44.08	50.0
KRG91440	Soybean	nucleus	45.59	48.14
KRH35377	Soybean	endoplasmic reticulum, nucleus	45.09	47.86
CDY38892	Canola	nucleus	45.84	45.27
CDX92711	Canola	nucleus	34.01	43.83
Bra029146.1-P	Field mustard	nucleus	45.59	43.3
VIT_16s0100g00450.t01	Wine grape	nucleus	49.87	40.41

Protein Annotations

EntrezGene:102587621	MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504
InterPro:IPR012677	UniProt:M1B4N1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400014266	PGSC:PGSC0003DMG400014266
EnsemblPlants:PGSC0003DMT400037012	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295E733	RefSeq:XP_006353368.1	RefSeq:XP_015166799.1
SEG:seg	:	:	:	:	:

Description

Splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014266]

Coordinates

chr3:+:42150852..42155459

Molecular Weight (calculated)

45583.9 Da

IEP (calculated)

11.068

GRAVY (calculated)

-1.495

Length

397 amino acids

Sequence
(BLAST)

001: MRPIFCGNFE FETRQPELEK VFKRYGKVDR VDMKSGFAFV YMDDERDAED AIQGLDRIEF GRKGRRLRVE WSKEERSRKP EGSKKSSSSF RVSKTLFVIN
101: FDPYNTRTRD LERHFDPYGK ILNIRIRRNF GFIQFESQED ATRALDATNM SKLMDRVITV EYAIKDDDDR KNGYGPGKTY NQSPRRGYDR GRSRSPRGRD
201: RLSPDYGRGR DRPSPDYGRG RDRPSPDSGR GRDRPSPDYG RGRDRPIPDF GRGRDRPSAD FGRGRDRLSP DYGRGPSRSP KHRERNSEYG RGHSPVVGKE
301: RNPGHGNVRS PSPRRERTGP GNGLMSSPLK NRSPGYGDRP GPSPQRERRD KYSLDGYNRG SSPGPKLEPV GSPVRDGRGN SERCRSRSPP ARERSRS

Best Arabidopsis Sequence Match ( AT4G25500.4 )
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.