Factsheet for Solyc03g026240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03880_001	Banana	nucleus	45.77	65.42
GSMUA_Achr5P10480_001	Banana	nucleus	45.19	64.05
GSMUA_Achr3P12360_001	Banana	nucleus	38.78	63.94
GSMUA_Achr1P16190_001	Banana	nucleus	32.07	63.22
PGSC0003DMT400037012	Potato	nucleus	69.1	59.7
Solyc01g091750.2.1	Tomato	nucleus	37.9	59.63
Os02t0122800-02	Rice	nucleus	48.4	59.5
TraesCSU01G119700.2	Wheat	nucleus	48.4	59.07
TraesCS6B01G088500.2	Wheat	nucleus	48.4	59.07
TraesCS6A01G065400.2	Wheat	nucleus	48.4	58.87
Solyc10g009330.2.1	Tomato	nucleus	32.65	54.11
Solyc01g096180.2.1	Tomato	nucleus	36.73	51.43
Solyc11g072340.1.1	Tomato	nucleus	52.19	50.56
EES06200	Sorghum	nucleus	43.44	50.51
CDY57708	Canola	nucleus	48.98	49.56
CDX89418	Canola	nucleus	48.69	49.41
Bra013895.1-P	Field mustard	nucleus	48.69	49.26
CDY52361	Canola	nucleus	48.4	47.7
Bra010459.1-P	Field mustard	nucleus	48.4	47.7
CDY54084	Canola	nucleus	47.23	46.55
AT4G25500.4	Thale cress	nucleus	46.94	46.0
CDY32603	Canola	nucleus	46.65	45.98
AT5G52040.2	Thale cress	nucleus	47.52	45.66
KRG91440	Soybean	nucleus	49.56	45.21
KRH35377	Soybean	endoplasmic reticulum, nucleus	48.69	44.65
CDX92711	Canola	nucleus	39.07	43.51
CDY38892	Canola	nucleus	48.69	41.54
Bra029146.1-P	Field mustard	nucleus	48.1	39.47
VIT_16s0100g00450.t01	Wine grape	nucleus	51.31	35.92

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
UniProt:K4BF97	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc03g026240.2
EnsemblPlants:Solyc03g026240.2.1	UniParc:UPI00027690A1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:3676912..3681357

Molecular Weight (calculated)

39628.5 Da

IEP (calculated)

10.928

GRAVY (calculated)

-1.218

Length

343 amino acids

Sequence
(BLAST)

001: MRPIFCGNFE FETRQPELER LFKRYGKVDR VDMKSGFAFV YMDDERDAKD AIQGLDRIEF GRKGRRLRVE WSKEERSRKP EGSKKSSSSF RVSKTLFVIN
101: FDPYNTRTRD LERHFDPYGK ILNIRIRRNF GFIQFETQED ATRALDATNM SKLMDRVITV EYAIRDDDDR KNGYGPGKTY NQSPRRGYDR GRSRSPRGRD
201: RLSPDYGRGR DRPSPDYGRG RDRPSPDYGR GRDRPISDFD RGRDRPNSDF GRGRDQLSPD YGRGPSRSPK HREGNSEYGR GHSPAVGKER NPGHGNVRSP
301: SPRRERTGPG NGLMILVLRG RGEINIARMV IIVAAAQVLN LNQ

Best Arabidopsis Sequence Match ( AT5G52040.1 )
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESPSR SPPAEE

Arabidopsis Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.