CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91440	Soybean	nucleus	96.79	96.28
GSMUA_Achr1P03880_001	Banana	nucleus	44.65	69.58
GSMUA_Achr5P10480_001	Banana	nucleus	44.92	69.42
GSMUA_Achr3P12360_001	Banana	nucleus	37.97	68.27
GSMUA_Achr1P16190_001	Banana	nucleus	31.55	67.82
KRH48257	Soybean	nucleus	44.12	65.22
KRH65157	Soybean	nucleus	43.58	64.68
CDY54084	Canola	nucleus	56.42	60.63
Os02t0122800-02	Rice	nucleus	45.19	60.57
CDX89418	Canola	nucleus	54.55	60.35
CDY52361	Canola	nucleus	55.08	59.2
Bra010459.1-P	Field mustard	nucleus	55.08	59.2
CDY57708	Canola	nucleus	53.21	58.7
Bra013895.1-P	Field mustard	nucleus	53.21	58.7
TraesCS6B01G088500.2	Wheat	nucleus	43.32	57.65
AT4G25500.4	Thale cress	nucleus	53.74	57.43
AT5G52040.2	Thale cress	nucleus	54.81	57.42
TraesCSU01G119700.2	Wheat	nucleus	43.05	57.3
CDY32603	Canola	nucleus	53.21	57.18
TraesCS6A01G065400.2	Wheat	nucleus	43.05	57.09
KRH47859	Soybean	nucleus	39.04	56.37
KRH06424	Soybean	nucleus	39.3	55.68
CDY38892	Canola	nucleus	57.75	53.73
Solyc11g072340.1.1	Tomato	nucleus	50.53	53.39
EES06200	Sorghum	nucleus	41.44	52.54
Bra029146.1-P	Field mustard	nucleus	57.22	51.2
Solyc03g026240.2.1	Tomato	nucleus	44.65	48.69
VIT_16s0100g00450.t01	Wine grape	nucleus	60.7	46.33
PGSC0003DMT400037012	Potato	nucleus	47.86	45.09
CDX92711	Canola	nucleus	36.63	44.48

Protein Annotations

EntrezGene:100796509	MapMan:16.4.6.3	Gene3D:3.30.70.330	EMBL:ACUP02006670	EMBL:BT094454	UniProt:C6TAB8
EnsemblPlantsGene:GLYMA_10G239100	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH35377
ProteinID:KRH35377	ProteinID:KRH35377.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257
PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0001B160B5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:46771981..46776256

Molecular Weight (calculated)

43020.4 Da

IEP (calculated)

10.549

GRAVY (calculated)

-1.499

Length

374 amino acids

Sequence
(BLAST)

001: MQQGKMRPIF CGNFEYDARQ SELERLFRRY GKVDRVDMKS GFAFIYMEDE RDAEAAIRAL DRVEFGRKGR RLRVEWTKHE RGVRRPASSR RSSAIGRPSK
101: TLFVINFDTY HTRTRDLERH FEPYGKIVSV RIRRNFAFVQ YESEDDASRA LEATNMSKLL DRVISVEFAV KDDDDRRNGY SPERGRDRQR DRSRDGRRSP
201: SPYRKERGSP DYGRGPSPYQ RERGSPDYGR DRSRSRSPPR RERASPAYGR RSISPYRRER EGSEPVRDSS RSPYHKERGR TDHGISPSQS PEGRGRKSPQ
301: NGHGSSRSPR DTGKTSPENG HGSGSPDEKG NPSPYNGYGG SPNTVPDPRD SPNYGGPESP MHERYHSQSP PAEE

Best Arabidopsis Sequence Match ( AT4G25500.4 )
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.