Factsheet for Bra029146.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32603	Canola	nucleus	69.62	83.62
AT5G52040.2	Thale cress	nucleus	65.79	77.03
Bra013895.1-P	Field mustard	nucleus	56.94	70.21
Bra010459.1-P	Field mustard	nucleus	57.42	68.97
GSMUA_Achr3P12360_001	Banana	nucleus	33.97	68.27
KRH48257	Soybean	nucleus	40.19	66.4
KRH65157	Soybean	nucleus	39.95	66.27
GSMUA_Achr1P03880_001	Banana	nucleus	38.04	66.25
GSMUA_Achr5P10480_001	Banana	nucleus	37.56	64.88
Solyc01g091750.2.1	Tomato	nucleus	32.78	62.84
GSMUA_Achr1P16190_001	Banana	nucleus	25.84	62.07
Os02t0122800-02	Rice	nucleus	41.39	62.01
PGSC0003DMT400043937	Potato	nucleus	38.52	60.07
TraesCS6B01G088500.2	Wheat	nucleus	39.47	58.72
TraesCSU01G119700.2	Wheat	nucleus	39.23	58.36
TraesCS6A01G065400.2	Wheat	nucleus	39.23	58.16
KRH35377	Soybean	endoplasmic reticulum, nucleus	51.2	57.22
KRG91440	Soybean	nucleus	51.2	56.91
EES06200	Sorghum	nucleus	39.47	55.93
Solyc11g072340.1.1	Tomato	nucleus	45.22	53.39
VIT_15s0048g01870.t01	Wine grape	nucleus	40.43	51.21
Solyc03g026240.2.1	Tomato	nucleus	39.47	48.1
PGSC0003DMT400037012	Potato	nucleus	43.3	45.59
VIT_16s0100g00450.t01	Wine grape	nucleus	48.56	41.43

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra029146	EnsemblPlants:Bra029146.1	EnsemblPlants:Bra029146.1-P	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005681	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010445
GO:GO:0019538	GO:GO:0031053	GO:GO:0040029	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4EK29
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025400DE	SEG:seg

Description

AT5G52040 (E=1e-106) ATRSP41 | ATRSP41; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA03:-:6563147..6568659

Molecular Weight (calculated)

48957.7 Da

IEP (calculated)

10.582

GRAVY (calculated)

-1.496

Length

418 amino acids

Sequence
(BLAST)

001: MGLSIFSGSE DPKRYTKNWI SSRIQIYKNT DRSRLYLGSK QGFDCRRPVR AFQPLAKGKM RPVFCGNFEY DAREGDLERL FRRYGKVDRV DMKAGFAFVY
101: MENERDAEDA IRALDRYEYG RKGRRLRVEW TKNERGAPTR SSGSRRSSSL RPSKTLFVIN FDAESTRTRD LERHFEPYGK IVNVRIRRNF AFIQYELQED
201: ATRALEATNS SKLMDKVISV EYAMKDDDAR GNGYSPERRR DRSPDRRRRS PSPYRRERGS PDYGRGASPV GHRKERTSPD YGRGRRSPSP YRRARVSPDY
301: KRDDRRRERE ASPDYKRDDR RREEASPDYK RDDRRREKEA SPENGAVRDR SPRNGRGESR SPPPYEKRRE RSRSKSSPEN GQVESPGPIM EEEEAGRGYD
401: GAESPIRESH SRSPPAEE

Best Arabidopsis Sequence Match ( AT5G52040.1 )
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESPSR SPPAEE

Arabidopsis Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.