Factsheet for TraesCS6B01G088500.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G119700.2	Wheat	nucleus	98.58	98.58
TraesCS6A01G065400.2	Wheat	nucleus	98.22	97.87
Os02t0122800-02	Rice	nucleus	79.0	79.57
GSMUA_Achr1P16190_001	Banana	nucleus	40.57	65.52
EES06200	Sorghum	nucleus	68.68	65.42
GSMUA_Achr3P12360_001	Banana	nucleus	48.4	65.38
GSMUA_Achr5P10480_001	Banana	nucleus	56.23	65.29
GSMUA_Achr1P03880_001	Banana	nucleus	55.52	65.0
KRH65157	Soybean	nucleus	57.3	63.89
KRH48257	Soybean	nucleus	56.58	62.85
Solyc01g091750.2.1	Tomato	nucleus	45.2	58.26
PGSC0003DMT400043937	Potato	nucleus	53.38	55.97
VIT_15s0048g01870.t01	Wine grape	nucleus	58.72	50.0
CDX89418	Canola	nucleus	59.43	49.41
Bra013895.1-P	Field mustard	nucleus	59.43	49.26
CDY57708	Canola	nucleus	59.07	48.97
Solyc11g072340.1.1	Tomato	nucleus	61.57	48.87
CDY54084	Canola	nucleus	60.5	48.85
CDY52361	Canola	nucleus	60.5	48.85
Bra010459.1-P	Field mustard	nucleus	60.5	48.85
Solyc03g026240.2.1	Tomato	nucleus	59.07	48.4
TraesCS4B01G398900.1	Wheat	nucleus	46.62	47.99
AT5G52040.2	Thale cress	nucleus	60.14	47.34
AT4G25500.4	Thale cress	nucleus	58.72	47.14
CDY32603	Canola	nucleus	58.36	47.13
KRH35377	Soybean	endoplasmic reticulum, nucleus	57.65	43.32
KRG91440	Soybean	nucleus	57.65	43.09
CDX92711	Canola	nucleus	46.62	42.53
PGSC0003DMT400037012	Potato	nucleus	58.72	41.56
CDY38892	Canola	nucleus	58.01	40.55
Bra029146.1-P	Field mustard	nucleus	58.72	39.47
VIT_16s0100g00450.t01	Wine grape	nucleus	60.5	34.69

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS6B01G088500	EnsemblPlants:TraesCS6B01G088500.2	SEG:seg

Description

No Description!

Coordinates

chr6B:+:64231677..64233862

Molecular Weight (calculated)

32414.4 Da

IEP (calculated)

10.336

GRAVY (calculated)

-1.401

Length

281 amino acids

Sequence
(BLAST)

001: MRPIFCGNLE YDARQSEIER LFGKYGRVER VDMKTGFAFV YMEDERDAED AIHRLDRTDF GRKARRLRVE WTKEDRSGGR KGNGKRSPSS VKPTKTLFVI
101: NFDPINTRTR DLEKHFDLYG KIVNIRIRRN FAFVQYETQE DATKALDGTN GSTVMDRVIS VEYALRDDDE KRNGYSPDRR GGRDRSPDRR DNRGRSASPY
201: GRGRERGSPD YGRGRERGSP DYGKGGARDS PDYVRGGSPY GGKGDDRASP KYDRERREAS PAYDRRRSRS PARSPAREDR D

Best Arabidopsis Sequence Match ( AT5G52040.2 )
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESSPS RSPPAEE

Arabidopsis Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.