Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022243_P002 | Maize | nucleus | 91.87 | 91.87 |
| Os07t0633200-02 | Rice | nucleus | 79.9 | 78.4 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 75.6 | 76.33 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 74.16 | 75.61 |
| TraesCS2D01G160400.1 | Wheat | nucleus | 73.68 | 75.12 |
| HORVU2Hr1G028210.9 | Barley | nucleus | 74.64 | 75.0 |
| EER92211 | Sorghum | nucleus | 72.25 | 70.89 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 65.55 | 63.13 |
| CDY08473 | Canola | nucleus | 61.24 | 62.44 |
| Bra034794.1-P | Field mustard | nucleus | 61.72 | 62.32 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 70.33 | 60.0 |
| VIT_06s0004g00710.t01 | Wine grape | nucleus | 66.99 | 57.14 |
| KRH16958 | Soybean | nucleus | 67.46 | 56.63 |
| KRH72576 | Soybean | nucleus | 66.03 | 54.55 |
| CDY01078 | Canola | nucleus | 61.72 | 54.2 |
| Solyc01g005820.2.1 | Tomato | nucleus | 65.07 | 53.97 |
| PGSC0003DMT400081835 | Potato | nucleus | 63.64 | 53.63 |
| AT3G13570.1 | Thale cress | nucleus | 64.11 | 51.15 |
| PGSC0003DMT400010908 | Potato | nucleus | 63.64 | 47.5 |
| AT1G55310.3 | Thale cress | nucleus | 63.64 | 44.48 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 58.37 | 42.66 |
| EES16196 | Sorghum | nucleus | 48.33 | 38.55 |
| EES10309 | Sorghum | nucleus | 49.76 | 38.52 |
| KXG39307 | Sorghum | nucleus | 41.63 | 36.1 |
| KXG36736 | Sorghum | nucleus | 33.01 | 27.6 |
| KXG39239 | Sorghum | nucleus | 30.14 | 26.69 |
| KXG25727 | Sorghum | nucleus | 30.14 | 23.08 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | EntrezGene:8063521 | UniProt:C5X386 | ProteinID:EER97585.2 | EnsemblPlants:EER97602 |
| ProteinID:EER97602 | ProteinID:EER97602.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EMBL:KC425085 | EMBL:KC425086 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OQU90322.1 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF41 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | EnsemblPlantsGene:SORBI_3002G387200 | SUPFAM:SSF54928 | unigene:Sbi.2587 | UniParc:UPI0001A83A10 | RefSeq:XP_002461081.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:74142514..74145880
Molecular Weight (calculated)
24550.5 Da
IEP (calculated)
10.802
GRAVY (calculated)
-1.437
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRGYSYSPS PPRGYRRRER SPSPRDYYGG RGRDLPTSLL VRNLRRDCRP EDLRRPFGQF GRLKDIYLPR DYYTGEPRGF GFVQYYDPDD AADAKYYMDG
101: QVVLGRQITV VFAEENRKKP QEMRARDRVR GHSYDRRYSR SRSPRYYRGG SPSRSRSYSR SPSPRDPKHR LRERSYSGSP VDSISRSGSP YEDGYPRSSQ
201: RERSVSVSG
101: QVVLGRQITV VFAEENRKKP QEMRARDRVR GHSYDRRYSR SRSPRYYRGG SPSRSRSYSR SPSPRDPKHR LRERSYSGSP VDSISRSGSP YEDGYPRSSQ
201: RERSVSVSG
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.