CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04931
KRH16160

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24740.1	KRH04931	AT4G31580.1	10593939
AT4G24740.1	KRH16160	AT4G31580.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57157	Soybean	cytosol	88.35	96.98
KRH63654	Soybean	nucleus	82.2	91.29
KRH54290	Soybean	cytosol, nucleus	81.78	90.82
VIT_17s0000g09500.t01	Wine grape	nucleus	82.63	89.66
AT4G24740.1	Thale cress	nucleus	76.91	85.01
GSMUA_Achr11P...	Banana	cytosol	60.17	83.78
PGSC0003DMT400046853	Potato	cytosol	76.48	83.56
GSMUA_Achr8P28600_001	Banana	cytosol	37.29	81.48
Solyc03g112050.2.1	Tomato	cytosol	66.74	81.19
Os12t0460800-03	Rice	cytosol	31.78	79.79
TraesCS6B01G238900.1	Wheat	cytosol	66.53	73.02
TraesCS6A01G210100.1	Wheat	cytosol	66.53	73.02
TraesCS6D01G193300.1	Wheat	cytosol	66.53	73.02
KXG30551	Sorghum	cytosol	68.01	71.97
TraesCS5D01G378900.2	Wheat	cytosol, mitochondrion	63.98	71.23
TraesCS5B01G371800.1	Wheat	cytosol	63.98	71.23
TraesCS5A01G369500.2	Wheat	cytosol	63.98	71.23
HORVU5Hr1G091970.12	Barley	cytosol, mitochondrion	63.98	71.23
GSMUA_Achr3P17160_001	Banana	cytosol	67.37	70.82
KXG35096	Sorghum	cytosol	63.56	70.75
Zm00001d017096_P005	Maize	cytosol	66.53	70.56
Zm00001d050970_P003	Maize	cytosol	66.53	70.4
KRH67569	Soybean	nucleus	65.89	70.05
Zm00001d005361_P007	Maize	cytosol, plastid	62.08	69.43
HORVU6Hr1G053760.52	Barley	cytosol	63.35	68.58
KRG95853	Soybean	cytosol	41.1	67.6
KRH61991	Soybean	cytosol	45.55	65.75
KRH52649	Soybean	nucleus	54.66	64.02
KXG37288	Sorghum	cytosol	51.48	63.45
KRG94066	Soybean	cytosol	15.89	56.82
CDY34307	Canola	plastid	77.12	50.07
CDY03422	Canola	plastid	76.91	49.93
Bra013829.1-P	Field mustard	nucleus	73.94	48.74
KRH63030	Soybean	cytosol, nucleus	17.37	30.94
KRH28929	Soybean	nucleus	23.09	24.49
KRH76530	Soybean	nucleus	22.88	24.27
KRH07798	Soybean	cytosol	22.46	23.82
KRH39422	Soybean	cytosol	22.46	23.82
KRH32624	Soybean	nucleus	24.58	21.21
KRH22757	Soybean	nucleus	23.94	20.7
KRH26554	Soybean	nucleus	23.73	20.55
KRH20002	Soybean	nucleus	22.03	20.04
KRH25147	Soybean	mitochondrion	22.25	18.99
KRH14940	Soybean	nucleus	22.88	15.21
KRH73194	Soybean	nucleus	23.09	14.99
KRH07651	Soybean	nucleus	23.94	11.88
KRH45354	Soybean	nucleus	23.94	11.81
KRG90793	Soybean	nucleus	23.94	11.43
KRH35970	Soybean	nucleus	23.94	11.33
KRH60590	Soybean	nucleus	24.79	10.65
KRH09504	Soybean	nucleus	25.64	10.26
KRH38978	Soybean	nucleus	25.0	10.08
KRH41895	Soybean	nucleus	23.09	9.75
KRH75392	Soybean	nucleus	11.65	6.41
CDY03423	Canola	cytosol, peroxisome, plastid	1.27	1.92
Bra013830.1-P	Field mustard	plastid	0.42	0.68

Protein Annotations

EntrezGene:100804452	MapMan:18.4.3.2	Gene3D:3.30.200.20	EMBL:ACUP02010364	EnsemblPlantsGene:GLYMA_17G125500	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	UniProt:I1MUK0	InterPro:IPR000719	EnsemblPlants:KRH03872	ProteinID:KRH03872	ProteinID:KRH03872.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24058	PANTHER:PTHR24058:SF102
InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00023D516F	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:10004936..10008977

Molecular Weight (calculated)

54643.1 Da

IEP (calculated)

8.967

GRAVY (calculated)

-0.463

Length

472 amino acids

Sequence
(BLAST)

001: MEMERVFEFP HTHMDRRPRK RARLGWDIPE VPKAQVGLFC GQDVGTISSF APSRGPSENT TSSLFVKPVA RNGSPPWRDD DKDGHYMFAL GENLTSRYKI
101: HSKMGEGTFG QVLECWDRER KEMVAVKIVR GIKKYREAAM IEIEVLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG PSLYDFLRKN NYRSFPIDLV
201: REIGRQLLEC IAFMHDLRMI HTDLKPENIL LVSPEYVKVP DYKSSSRSPS SYFKRVPKSS AIKVIDFGST TYEREDQNYI VSTRHYRAPE VILGIYTYCK
301: CCGKNACLTV FCMLTHDNHE KGYMQAKVDF GNDVLGLGWS YPCDIWSVGC ILVELCTGGA LFQTHENLEH LAMMERVLGP LPQPMLKRVD RHAEKYVRRG
401: RLDWPEGATS RESIKAVMKL PRLQNLVMQH VDHSAGDLIH LLQGLLRYDP SERLTAKEAL RHSFFMRDQF RR

Best Arabidopsis Sequence Match ( AT4G24740.1 )
(BLAST)

001: MEMERVHEFP HTHMDRRPRK RARLGWDVLP QATKAQVGMF CGQEIGNISS FASSGAPSDN SSSLCVKGVA RNGSPPWRED DKDGHYIFEL GDDLTPRYKI
101: YSKMGEGTFG QVLECWDRER KEMVAVKIVR GVKKYREAAM IEIEMLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG SSLYDFLRKN NYRSFPIDLV
201: REIGWQLLEC VAFMHDLRMI HTDLKPENIL LVSSDYVKIP EYKGSRLQRD VCYKRVPKSS AIKVIDFGST TYERQDQTYI VSTRHYRAPE VILGLGWSYP
301: CDVWSVGCII VELCTGEALF QTHENLEHLA MMERVLGPFP QQMLKKVDRH SEKYVRRGRL DWPDGATSRD SLKAVLKLPR LQNLIMQHVD HSAGELINMV
401: QGLLRFDPSE RITAREALRH PFFARRR

Arabidopsis Description

AFC2At4g24740 [Source:UniProtKB/TrEMBL;Acc:Q1EBU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.