CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90793	Soybean	nucleus	92.38	93.12
Os12t0640800-01	Rice	mitochondrion	19.96	87.67
AT3G53640.1	Thale cress	cytosol	35.71	55.45
KRH75392	Soybean	nucleus	46.64	54.2
TraesCS4D01G044900.2	Wheat	nucleus	32.4	51.52
TraesCS4A01G269100.1	Wheat	nucleus	32.4	51.27
TraesCS4D01G044600.1	Wheat	nucleus	32.7	51.26
VIT_01s0011g03350.t01	Wine grape	nucleus	55.87	51.1
TraesCS4B01G044900.1	Wheat	nucleus	32.2	50.71
Bra025165.1-P	Field mustard	nucleus	44.73	49.5
PGSC0003DMT400053226	Potato	mitochondrion	41.32	49.28
CDX83561	Canola	nucleus	44.53	49.22
CDY13591	Canola	nucleus	43.73	49.21
AT3G25840.1	Thale cress	nucleus	45.54	48.56
Solyc05g009540.2.1	Tomato	nucleus	48.55	48.16
Bra017346.1-P	Field mustard	nucleus	42.83	47.98
AT1G13350.3	Thale cress	nucleus	39.72	47.48
PGSC0003DMT400033770	Potato	mitochondrion	48.14	46.29
TraesCS5D01G000600.1	Wheat	nucleus	44.03	46.26
TraesCS5B01G001400.1	Wheat	nucleus	43.93	45.86
TraesCS5A01G000100.1	Wheat	nucleus	43.73	45.8
KXG24155	Sorghum	nucleus	43.83	45.71
HORVU5Hr1G000200.27	Barley	cytosol, nucleus	43.13	45.22
Zm00001d031231_P057	Maize	nucleus	42.73	44.01
OQU80322	Sorghum	nucleus	27.08	43.97
GSMUA_Achr1P22430_001	Banana	mitochondrion	43.93	42.61
GSMUA_Achr1P12470_001	Banana	nucleus	45.44	41.79
Zm00001d041183_P004	Maize	nucleus	43.73	41.72
HORVU4Hr1G007330.12	Barley	nucleus, plastid	28.49	41.64
CDY04183	Canola	cytosol, nucleus, plasma membrane	44.13	33.28
KRH63030	Soybean	cytosol, nucleus	8.43	31.7
HORVU5Hr1G000140.1	Barley	mitochondrion	17.75	31.16
Os03t0710100-01	Rice	nucleus	24.77	31.11
CDY39184	Canola	nucleus	41.52	30.29
KRH61991	Soybean	cytosol	9.93	30.28
KRH52649	Soybean	nucleus	11.63	28.78
KRH67569	Soybean	nucleus	12.24	27.48
KRG94066	Soybean	cytosol	3.61	27.27
KRH54290	Soybean	cytosol, nucleus	11.53	27.06
KRH63654	Soybean	nucleus	11.53	27.06
KRH57157	Soybean	cytosol	11.23	26.05
KRH39422	Soybean	cytosol	11.33	25.39
KRH07798	Soybean	cytosol	11.33	25.39
KRH28929	Soybean	nucleus	11.13	24.94
KRH76530	Soybean	nucleus	10.93	24.49
KRG95853	Soybean	cytosol	6.92	24.04
KRH03872	Soybean	nucleus	11.33	23.94
KRH26554	Soybean	nucleus	12.24	22.39
KRH22757	Soybean	nucleus	12.24	22.34
KRH32624	Soybean	nucleus	11.84	21.57
KRH20002	Soybean	nucleus	10.83	20.81
KRH14940	Soybean	nucleus	13.44	18.87
KRH25147	Soybean	mitochondrion	10.43	18.81
KRH73194	Soybean	nucleus	13.54	18.57
KRH60590	Soybean	nucleus	16.55	15.01
KRH09504	Soybean	nucleus	16.55	13.99
KRH41895	Soybean	nucleus	15.65	13.95
KRH45354	Soybean	nucleus	13.34	13.9
KRH07651	Soybean	nucleus	13.04	13.67
KRH38978	Soybean	nucleus	16.05	13.66

Protein Annotations

Gene3D:1.10.510.10	MapMan:16.4.6.8	MapMan:18.4.3.3	Gene3D:3.30.200.20	UniProt:A0A0R0I4J2	EMBL:ACUP02006715
ncoils:Coil	EnsemblPlantsGene:GLYMA_10G275400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	EnsemblPlants:KRH35970	ProteinID:KRH35970	ProteinID:KRH35970.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF317
InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0003DED3C6	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:49817347..49826178

Molecular Weight (calculated)

115369.0 Da

IEP (calculated)

7.597

GRAVY (calculated)

-1.265

Length

997 amino acids

Sequence
(BLAST)

001: MATDARDSRR KHHRSSSPED VDRSSKRHKH RHNSHRHRHG SKKRDEEVEF DDRTIAAVPS PTSHRYLHDD DVEEGEILED EALDGEVGKK ETESDVEPGE
101: IKVTGDRDVR SDNQNSEPLT KISETRNEDI RDDKFISPAI DAQDDVSPNR SSSETRDGKH AQARTDGVGN GYLDPKSSKG DKWQNGELGH FKGNEKLKGD
201: FHDPTLEANV RKAHYHRNSS SESGGEKYRM SGSSPSHGRY RSRSRSIGHT RDRSRSRSII DEYPHSKRRR FDYDHDEERV RARGREHGHG SVVDDRREYG
301: IRYHNREARD RDVDRDLHGE KKQEETSRGK EIEWEHKRGK ERERSRDRYR RDIEKDRSRE REEDRDRRQE KERDRSWDTV MERDRRREKE RDRSRDRIRG
401: GKRDKDPENE RDDKHRARDN IKKRERHDDK YRHKDRDTAN GKNRHLHHED GDDNGDRYRK HSRHEENEYR WERKRNSDNP VKVYSSMGST AEVGESKLTS
501: SEVEPDDLEE DTLQLPEQEE EDLNRIKEES RRRREAIMEK YKKQHQQVEE AVGNEGNDKK AAIPNDISEA RDGKNDDADY LEPSFAVGKS PENVNVASKK
601: MSPAGGLGEG TPKSERSEDK FCDDIFGETP TGVRKSGKGD GLLIERAGLH DNWDDAEGYY SYRIGEILDG RYEVTAAHGR GVFSTVVRGK NLKMGNGEPE
701: EVAIKIIRSN DTMYKAGMDE LVILKKLVGA DPDDKRHCVR FLSSFRYRNH LCLVFESLNM NLREVLKKFG RNIGLRLTAV RAYAKQLFIA LKHLRNCGVL
801: HCDIKPDNML VNESKNVLKL CDFGNAMFAG KNEVTPYLVS RFYRAPEIIL GLPYDHPLDI WSVGCCLYEL YIGKVLFPGL TNNDMLRLHM ELKGPFPKKM
901: LRKGAFTEQH FDQDLNFLAT EEDPVTKKTI KRLILNIKPK DIGTLITGSP GEDPKMLANF KDLLEKVFVL DPDKRLTVSQ ALNHPFITGV SSQLSAC

Best Arabidopsis Sequence Match ( AT3G25840.1 )
(BLAST)

001: MANDKQIESH HRKHHRSSSS SDDTEKASKR HKHRHHKHHH HRHRHHRDKK RENEIPSAGD ETEILDVTPA APIVVSNGCE EEDVEEGEIL EEDGIGDVLM
101: KTADSDGESG EIKFEDNNLP PLGEKGRQGE EKSSNGVLTR ESEREDKRWD KEAGGPSERV SKLSYDNGRS SFSPSNSRQS NEGRARSRSK SHDRERETSR
201: SRFAEDEFSD RGRHHDSSRD YHHDRVDSVR TEERYHRRGR YEENDRQYSR EVLERDRSKE RDMDREGSIR DRDSEGSKRR DKDSDRRRER EREKRREIES
301: DRERRKEKER ERSIDRDRRK EREGDYLRDR ANERGRSRDR TRYNSRERKR EKEREGEKDW ERGRETQKDR EKYISSDVDY GEMRHKQSRN TRYDAVDDLE
401: MRKPNSLKAH NSKGDKLEET WANDERSRNE DGQDDNDEGL TWKSPEEEEE ELLNRIKEES RKRMEAILEK HKRKPEQQNE LLTQDNGKDI VPETGAPVST
501: SPAVVIAANV GQAKTNLDFD TVAAKAPLIA GGPPTMSGIS DSEKNQAQAG LGEGSPKSER SADMFHDDIF GESPAGIRKV GGKGDGVPMV RSGLHDNWDD
601: AEGYYSYQFG ELLDGRYEVI ATHGKGVFST VVRAKDLKAG PAEPEEVAIK IIRNNETMHK AGKIEVQILK KLAGADREDR RHCVRFLSSF KYRNHLCLVF
701: ESLHLNLREV LKKFGRNIGL QLSAVRAYSK QLFIALKHLK NCGVLHCDIK PDNMLVNEGK NVLKLCDFGN AMFAGKNEVT PYLVSRFYRS PEIILGLTYD
801: HPLDIWSVGC CLYELYSGKV LFPGATNNDM LRLHMELKGP FPKKMLRKGA FIDQHFDHDL NFYATEEDTV SGKLIKRMIV NVKPKDFGSI IKGYPGEDPK
901: ILAHFRDLLD KMFILDPERR LTVSQALAHP FITGK

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.