CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72313
CDY13444

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24740.1	CDX72313	AT4G31580.1	10593939
AT4G24740.1	CDY13444	AT4G31580.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34307	Canola	plastid	99.45	99.45
Bra013830.1-P	Field mustard	plastid	39.75	98.97
AT4G24740.1	Thale cress	nucleus	55.98	95.32
KRH63654	Soybean	nucleus	49.38	84.47
VIT_17s0000g09500.t01	Wine grape	nucleus	50.48	84.37
KRH57157	Soybean	cytosol	49.52	83.72
KRH54290	Soybean	cytosol, nucleus	48.83	83.53
PGSC0003DMT400046853	Potato	cytosol	47.32	79.63
GSMUA_Achr11P...	Banana	cytosol	36.59	78.47
Solyc03g112050.2.1	Tomato	cytosol	41.4	77.58
KRH03872	Soybean	nucleus	49.93	76.91
Os12t0460800-03	Rice	cytosol	19.53	75.53
GSMUA_Achr8P28600_001	Banana	cytosol	22.28	75.0
TraesCS6D01G193300.1	Wheat	cytosol	41.54	70.23
TraesCS6B01G238900.1	Wheat	cytosol	41.54	70.23
TraesCS6A01G210100.1	Wheat	cytosol	41.54	70.23
TraesCS5D01G378900.2	Wheat	cytosol, mitochondrion	40.58	69.58
TraesCS5A01G369500.2	Wheat	cytosol	40.58	69.58
TraesCS5B01G371800.1	Wheat	cytosol	40.58	69.58
HORVU5Hr1G091970.12	Barley	cytosol, mitochondrion	40.58	69.58
KXG30551	Sorghum	cytosol	41.82	68.16
KXG35096	Sorghum	cytosol	39.75	68.16
GSMUA_Achr3P17160_001	Banana	cytosol	41.68	67.48
CDX76200	Canola	endoplasmic reticulum, plasma membrane, plastid	12.65	67.15
Zm00001d005361_P007	Maize	cytosol, plastid	38.93	67.06
Zm00001d050970_P003	Maize	cytosol	40.85	66.59
Zm00001d017096_P005	Maize	cytosol	40.72	66.52
HORVU6Hr1G053760.52	Barley	cytosol	39.34	65.6
CDX73543	Canola	nucleus	41.54	65.51
CDX78188	Canola	cytosol	40.85	65.27
CDX75268	Canola	nucleus	33.42	61.06
CDX68873	Canola	nucleus	33.29	60.65
KXG37288	Sorghum	cytosol	31.22	59.27
Bra013829.1-P	Field mustard	nucleus	55.85	56.7
CDY52749	Canola	nucleus	41.4	37.07
CDY07581	Canola	nucleus	41.68	36.11
CDY50618	Canola	cytosol	15.13	25.7
CDX69144	Canola	nucleus	15.54	25.62
CDX72542	Canola	nucleus	15.41	25.45
CDX75507	Canola	nucleus	15.54	25.45
CDY40627	Canola	nucleus	15.41	25.4
CDY24345	Canola	cytosol	15.13	25.17
CDY07839	Canola	mitochondrion	10.04	24.91
CDY09171	Canola	nucleus	15.13	22.18
CDY06452	Canola	plasma membrane	15.82	21.66
CDX78145	Canola	nucleus	16.23	21.57
CDY26961	Canola	nucleus	15.68	21.23
CDX92332	Canola	nucleus	15.54	21.08
CDX93215	Canola	cytosol	15.68	19.9
CDY07061	Canola	cytosol	15.68	19.86
CDX73580	Canola	nucleus	16.37	18.77
CDX74804	Canola	cytosol	15.13	18.74
CDY65761	Canola	nucleus	14.99	18.6
CDX74622	Canola	nucleus	16.09	12.94
CDY37643	Canola	nucleus	15.96	12.72
CDY38548	Canola	nucleus	15.96	12.35
CDY13591	Canola	nucleus	14.58	11.96
CDX92157	Canola	nucleus	16.78	11.94
CDX95825	Canola	nucleus	16.78	11.64
CDX72990	Canola	nucleus	16.92	11.58
CDX83561	Canola	nucleus	14.31	11.53
CDX96477	Canola	nucleus	16.78	11.32
CDY11106	Canola	nucleus	16.78	10.66
CDX68227	Canola	nucleus	17.06	10.42
CDY04183	Canola	cytosol, nucleus, plasma membrane	14.58	8.02
CDY39184	Canola	nucleus	14.03	7.46
CDY03423	Canola	cytosol, peroxisome, plastid	1.1	2.56

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.2	Gene3D:3.30.200.20	Gene3D:3.40.250.10	GO:A0A078EQR7	EnsemblPlants:CDY03422
ProteinID:CDY03422	ProteinID:CDY03422.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00116071001	InterPro:IPR000719
InterPro:IPR001763	InterPro:IPR036873	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF00581	ScanProsite:PS00108
PFscan:PS50011	PFscan:PS50206	PANTHER:PTHR24058	PANTHER:PTHR24058:SF102	InterPro:Prot_kinase_dom	InterPro:Rhodanese-like_dom
InterPro:Rhodanese-like_dom_sf	SMART:SM00220	SMART:SM00450	SUPFAM:SSF52821	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0004EF0F04	SEG:seg	:	:	:	:

Description

BnaC01g16600D

Coordinates

chrLK031943:+:372228..378410

Molecular Weight (calculated)

82819.0 Da

IEP (calculated)

9.058

GRAVY (calculated)

-0.337

Length

727 amino acids

Sequence
(BLAST)

001: MESLSLPILN PLLPSGSSLY RKQSSRMTSS MSSSVSFATG RTSLSTVRRS RVGVVKMQAV DEDIDLKQMR DMAAAKKRWD GLLREGKVKL LTPREAGYAI
101: QLSNKPLLDV RPSSERNKAW VKGSDWVPIF DNEDNLDAGT LSKKVTSFAM GGWWSGTPIL SFNKLFLSKV EEKFPKETEL IVACQKGLRS LAACELLINA
201: GYQNIFWVQG GLESAEDEDL VTEGSQPLKL AGIGGFSEFL GWTDQQRAQA AKEGWGYRLV FTARLFGVIL AADALFLGAQ QLGHYIQELR VFSLLDLFES
301: VIMEMERVHE FPHTHMDRRP RKRARLGWDV LPTAPKAQVG MFCGQEIGNL SSFGAPSEIS SSSLSVKTVA RNDSPPWRED DKDGHYMFEL GDDLTPRYKI
401: YSKMGEGTFG QVLECWDRER KEMVAVKIVR GVKKYREAAM IEIEMLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG SSLYDFLRKN NYRSFPIDLV
501: REIGWQLLEC VAFMHDLRMI HTDLKPENIL LVSSDYVKIP EYKGSRLQRD VSYKRVPKSS AIKVIDFGST TYERQEQSYI VSTRHYRAPE VILGLGWSYP
601: CDVWSIGCII VELCTGEALF QTHENLEHLA MMERVLGPLP QQMLKKVDRH AEKYVRRGRL DWPDGATSRD SLKAVLKLPR LQNLIMQHVD HSAGELINMV
701: QGLLRFDPAE RLTAREALRH PFFARRR

Best Arabidopsis Sequence Match ( AT4G24740.1 )
(BLAST)

001: MEMERVHEFP HTHMDRRPRK RARLGWDVLP QATKAQVGMF CGQEIGNISS FASSGAPSDN SSSLCVKGVA RNGSPPWRED DKDGHYIFEL GDDLTPRYKI
101: YSKMGEGTFG QVLECWDRER KEMVAVKIVR GVKKYREAAM IEIEMLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG SSLYDFLRKN NYRSFPIDLV
201: REIGWQLLEC VAFMHDLRMI HTDLKPENIL LVSSDYVKIP EYKGSRLQRD VCYKRVPKSS AIKVIDFGST TYERQDQTYI VSTRHYRAPE VILGLGWSYP
301: CDVWSVGCII VELCTGEALF QTHENLEHLA MMERVLGPFP QQMLKKVDRH SEKYVRRGRL DWPDGATSRD SLKAVLKLPR LQNLIMQHVD HSAGELINMV
401: QGLLRFDPSE RITAREALRH PFFARRR

Arabidopsis Description

AFC2At4g24740 [Source:UniProtKB/TrEMBL;Acc:Q1EBU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.