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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX79732
CDY02344
CDY09519
CDY12454
CDY45430
CDY46773
CDY52188
CDY65665

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G32660.1 CDY02344 AT1G30860.1 21798944
AT4G32660.1 CDY09519 AT1G30860.1 21798944
AT4G32660.1 CDY12454 AT1G30860.1 21798944
AT4G32660.1 CDY52188 AT1G30860.1 21798944
AT4G32660.1 CDY45430 AT2G29210.1 21798944
AT4G32660.1 CDY65665 AT2G29210.1 21798944
AT4G32660.1 CDX79732 AT2G37340.1 21798944
AT4G32660.1 CDY46773 AT2G37340.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75268 Canola nucleus 98.75 99.0
AT4G32660.1 Thale cress nucleus 91.98 91.75
VIT_04s0008g04220.t01 Wine grape nucleus 72.18 71.64
Os01t0590900-01 Rice nucleus 69.17 71.13
TraesCS3D01G214800.2 Wheat cytosol 68.17 70.1
TraesCS3B01G242600.2 Wheat cytosol 68.17 70.1
EES00987 Sorghum mitochondrion 67.67 69.95
TraesCS3A01G212200.2 Wheat cytosol 67.92 69.85
KRH61991 Soybean cytosol 56.89 69.42
KRH52649 Soybean nucleus 69.67 68.98
HORVU3Hr1G051340.19 Barley golgi, plasma membrane, plastid 68.17 64.76
Zm00001d044338_P003 Maize mitochondrion 62.91 64.03
GSMUA_Achr8P04030_001 Banana mitochondrion 69.42 60.22
KRG94066 Soybean cytosol 19.3 58.33
CDX78188 Canola cytosol 61.4 53.85
CDX76200 Canola endoplasmic reticulum, plasma membrane, plastid 18.3 53.28
CDX73543 Canola nucleus 61.4 53.15
Zm00001d011258_P001 Maize cytosol, nucleus, plasma membrane 52.38 52.78
CDY03422 Canola plastid 60.65 33.29
CDY34307 Canola plastid 60.65 33.29
CDY52749 Canola nucleus 61.65 30.3
CDY07581 Canola nucleus 61.4 29.2
CDY50618 Canola cytosol 27.57 25.7
CDY24345 Canola cytosol 27.82 25.4
CDY07839 Canola mitochondrion 18.55 25.26
CDX75507 Canola nucleus 27.57 24.77
CDX69144 Canola nucleus 27.32 24.72
CDY40627 Canola nucleus 27.32 24.72
CDX72542 Canola nucleus 27.07 24.55
CDY09171 Canola nucleus 26.82 21.57
CDX78145 Canola nucleus 28.82 21.02
CDY26961 Canola nucleus 28.07 20.86
CDX92332 Canola nucleus 27.82 20.71
CDY06452 Canola plasma membrane 27.07 20.34
CDX93215 Canola cytosol 27.82 19.37
CDY07061 Canola cytosol 27.82 19.34
CDX74804 Canola cytosol 27.32 18.57
CDY65761 Canola nucleus 27.07 18.43
CDX73580 Canola nucleus 28.82 18.14
CDY13591 Canola nucleus 27.32 12.3
CDX74622 Canola nucleus 27.57 12.17
CDX83561 Canola nucleus 27.32 12.08
CDY37643 Canola nucleus 27.57 12.06
CDY38548 Canola nucleus 27.82 11.82
CDX72990 Canola nucleus 30.33 11.39
CDX96477 Canola nucleus 30.33 11.22
CDX92157 Canola nucleus 28.32 11.06
CDX95825 Canola nucleus 28.32 10.78
CDY11106 Canola nucleus 30.08 10.49
CDX68227 Canola nucleus 30.08 10.08
CDY04183 Canola cytosol, nucleus, plasma membrane 27.57 8.32
CDY39184 Canola nucleus 27.32 7.97
CDY03423 Canola cytosol, peroxisome, plastid 1.5 1.92
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.3.2Gene3D:3.30.200.20GO:A0A078C188EnsemblPlants:CDX68873ProteinID:CDX68873
ProteinID:CDX68873.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488
GO:GO:0005524GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016301GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00130598001InterPro:IPR000719InterPro:Kinase-like_dom_sf
PFAM:PF00069ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR24058PANTHER:PTHR24058:SF52InterPro:Prot_kinase_dom
SMART:SM00220SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI0004EAC2C5::
Description
BnaC01g05800D
Coordinates
chrLK031789:+:1676702..1679672
Molecular Weight (calculated)
46383.8 Da
IEP (calculated)
9.375
GRAVY (calculated)
-0.591
Length
399 amino acids
Sequence
(BLAST)
001: MMVNEFEKMD KERVRKRPRM TWDEAPAEPD AKRSQRHGSD GRVLLSPPLR EDDRDGHYNF SLRENLTPRY KILSKMGEGT FGRVLECWDR ETKEYVAIKI
101: IRSIKKYRDA AMIEIDVLQK LVKTDKGRKR CVQMKDWFDY RNHICIVFEK LGPSLFDFLK RNKYSAFPLA LVRDFGYQLL ESVAYMHELQ LVHTDLKPEN
201: ILLVSSENVK LPDNKRSGSN ETHFRCLPKS SAIKVIDFGS TVCDNRIHHS VVQTRHYRSP EVILGLGWSY QCDLWSIGCI LFELCTGEAL FQTHDNLEHL
301: AMMERALGPL PEHMTRKASR GAEKYFRRGG RLNWPEGANS RESIRAVKRL DRLKEMVARH VDNTRSGFAD LLYGLLQYNP SERLTANDAL DHPFFKSAG
Best Arabidopsis Sequence Match ( AT4G32660.1 )
(BLAST)
001: MIANGFESMD KERVRKRPRM TWDEAPAEPE AKRAVIKGHG SDGRILSPPL RDDDRDGHYV FSLRDNLTPR YKILSKMGEG TFGRVLECWD RDTKEYVAIK
101: IIRSIKKYRD AAMIEIDVLQ KLVKSDKGRT RCVQMKNWFD YRNHICIVFE KLGPSLFDFL KRNKYSAFPL ALVRDFGCQL LESVAYMHEL QLVHTDLKPE
201: NILLVSSENV KLPDNKRSAA NETHFRCLPK SSAIKLIDFG STVCDNRIHH SIVQTRHYRS PEVILGLGWS YQCDLWSIGC ILFELCTGEA LFQTHDNLEH
301: LAMMERALGP LPEHMTRKAS RGAEKYFRRG CRLNWPEGAN SRESIRAVKR LDRLKDMVSK HVDNTRSRFA DLLYGLLAYD PSERLTANEA LDHPFFKSSS
Arabidopsis Description
AFC3At4g32660 [Source:UniProtKB/TrEMBL;Acc:A1L4Y9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.