CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79732
CDY02344
CDY09519
CDY12454
CDY45430
CDY46773
CDY52188
CDY65665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32660.1	CDY02344	AT1G30860.1	21798944
AT4G32660.1	CDY09519	AT1G30860.1	21798944
AT4G32660.1	CDY12454	AT1G30860.1	21798944
AT4G32660.1	CDY52188	AT1G30860.1	21798944
AT4G32660.1	CDY45430	AT2G29210.1	21798944
AT4G32660.1	CDY65665	AT2G29210.1	21798944
AT4G32660.1	CDX79732	AT2G37340.1	21798944
AT4G32660.1	CDY46773	AT2G37340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011368.1-P	Field mustard	nucleus	100.0	100.0
CDX68873	Canola	nucleus	99.0	98.75
AT4G32660.1	Thale cress	nucleus	91.46	91.0
VIT_04s0008g04220.t01	Wine grape	nucleus	72.11	71.39
Os01t0590900-01	Rice	nucleus	69.1	70.88
TraesCS3D01G214800.2	Wheat	cytosol	68.09	69.85
TraesCS3B01G242600.2	Wheat	cytosol	68.09	69.85
EES00987	Sorghum	mitochondrion	67.59	69.69
TraesCS3A01G212200.2	Wheat	cytosol	67.84	69.59
KRH61991	Soybean	cytosol	56.53	68.81
KRH52649	Soybean	nucleus	69.6	68.73
HORVU3Hr1G051340.19	Barley	golgi, plasma membrane, plastid	68.09	64.52
Zm00001d044338_P003	Maize	mitochondrion	63.07	64.03
GSMUA_Achr8P04030_001	Banana	mitochondrion	69.85	60.43
KRG94066	Soybean	cytosol	19.6	59.09
CDX78188	Canola	cytosol	61.31	53.63
CDX76200	Canola	endoplasmic reticulum, plasma membrane, plastid	18.34	53.28
CDX73543	Canola	nucleus	61.31	52.93
Zm00001d011258_P001	Maize	cytosol, nucleus, plasma membrane	52.51	52.78
CDY34307	Canola	plastid	61.06	33.42
CDY03422	Canola	plastid	61.06	33.42
CDY52749	Canola	nucleus	61.56	30.17
CDY07581	Canola	nucleus	61.31	29.08
CDY50618	Canola	cytosol	27.64	25.7
CDY24345	Canola	cytosol	27.89	25.4
CDY07839	Canola	mitochondrion	18.59	25.26
CDX75507	Canola	nucleus	27.64	24.77
CDY40627	Canola	nucleus	27.39	24.72
CDX69144	Canola	nucleus	27.39	24.72
CDX72542	Canola	nucleus	27.14	24.55
CDY09171	Canola	nucleus	26.88	21.57
CDX78145	Canola	nucleus	28.89	21.02
CDY26961	Canola	nucleus	28.14	20.86
CDX92332	Canola	nucleus	27.89	20.71
CDY06452	Canola	plasma membrane	27.39	20.53
CDX93215	Canola	cytosol	28.14	19.55
CDY07061	Canola	cytosol	28.14	19.51
CDX74804	Canola	cytosol	27.64	18.74
CDY65761	Canola	nucleus	27.39	18.6
CDX73580	Canola	nucleus	28.89	18.14
CDX74622	Canola	nucleus	27.89	12.28
CDY13591	Canola	nucleus	27.14	12.19
CDY37643	Canola	nucleus	27.89	12.17
CDX83561	Canola	nucleus	27.14	11.97
CDY38548	Canola	nucleus	28.14	11.93
CDX72990	Canola	nucleus	30.4	11.39
CDX92157	Canola	nucleus	28.89	11.25
CDX96477	Canola	nucleus	30.4	11.22
CDX95825	Canola	nucleus	28.89	10.97
CDY11106	Canola	nucleus	30.15	10.49
CDX68227	Canola	nucleus	30.15	10.08
CDY04183	Canola	cytosol, nucleus, plasma membrane	27.64	8.32
CDY39184	Canola	nucleus	27.39	7.97
CDY03423	Canola	cytosol, peroxisome, plastid	1.76	2.24

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.2	Gene3D:3.30.200.20	GO:A0A078CJL2	EnsemblPlants:CDX75268	ProteinID:CDX75268
ProteinID:CDX75268.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00121136001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24058	PANTHER:PTHR24058:SF52	InterPro:Prot_kinase_dom
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002546255	:	:

Description

BnaA01g04340D

Coordinates

chrLK031804:+:407241..410242

Molecular Weight (calculated)

46226.5 Da

IEP (calculated)

9.252

GRAVY (calculated)

-0.591

Length

398 amino acids

Sequence
(BLAST)

001: MVNEFEKMDK ERVRKRPRMT WDEAPAEPDA KRSQRHGSDG RVLLSPPLRE DDRDGHYNFS LRENLTPRYK ILSKMGEGTF GRVLECWDRE TKEYVAVKII
101: RSIKKYRDAA MIEIDVLQKL VKTDKGRKRC VEMKDWFDYR NHICIVFEKL GPSLFDFLKR NKYSAFPLAL VRDFGYQLLE SVAYMHELQL VHTDLKPENI
201: LLVSSENVKL PDNKRSGSNE THFRCLPKSS AIKVIDFGST VCDNRIHHSV VQTRHYRSPE VILGLGWSYQ CDLWSIGCIL FELCTGEALF QTHDNLEHLA
301: MMERALGPLP EHMTRKASRG AEKYFRRGGR LNWPEGANSR ESIRAVKRLD RLKEMVARHV DSTRSGFADL LYGLLQYNPS ERLTANEALD HPFFKSAG

Best Arabidopsis Sequence Match ( AT4G32660.1 )
(BLAST)

001: MIANGFESMD KERVRKRPRM TWDEAPAEPE AKRAVIKGHG SDGRILSPPL RDDDRDGHYV FSLRDNLTPR YKILSKMGEG TFGRVLECWD RDTKEYVAIK
101: IIRSIKKYRD AAMIEIDVLQ KLVKSDKGRT RCVQMKNWFD YRNHICIVFE KLGPSLFDFL KRNKYSAFPL ALVRDFGCQL LESVAYMHEL QLVHTDLKPE
201: NILLVSSENV KLPDNKRSAA NETHFRCLPK SSAIKLIDFG STVCDNRIHH SIVQTRHYRS PEVILGLGWS YQCDLWSIGC ILFELCTGEA LFQTHDNLEH
301: LAMMERALGP LPEHMTRKAS RGAEKYFRRG CRLNWPEGAN SRESIRAVKR LDRLKDMVSK HVDNTRSRFA DLLYGLLAYD PSERLTANEA LDHPFFKSSS

Arabidopsis Description

AFC3At4g32660 [Source:UniProtKB/TrEMBL;Acc:A1L4Y9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.