Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 47.92 | 93.06 |
| GSMUA_Achr5P29210_001 | Banana | nucleus | 66.67 | 73.68 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 54.76 | 69.17 |
| VIT_08s0040g02850.t01 | Wine grape | cytosol, extracellular, mitochondrion, nucleus | 10.12 | 56.67 |
| VIT_16s0098g01020.t01 | Wine grape | nucleus | 25.3 | 34.0 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 27.08 | 31.6 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 27.68 | 30.19 |
Protein Annotations
| EntrezGene:100251921 | wikigene:100251921 | MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | ProteinID:CCB49760 |
| ProteinID:CCB49760.1 | UniProt:F6HC22 | EMBL:FN595514 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | EntrezGene:LOC100251921 |
| wikigene:LOC100251921 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF39 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 |
| SUPFAM:SSF54928 | SUPFAM:SSF57756 | TIGR:TC55821 | TIGR:TC57775 | UniParc:UPI0002109E03 | ArrayExpress:VIT_13s0067g03600 |
| EnsemblPlantsGene:VIT_13s0067g03600 | EnsemblPlants:VIT_13s0067g03600.t01 | unigene:Vvi.502 | RefSeq:XP_002281756 | RefSeq:XP_002281756.2 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:-:2005652..2009957
Molecular Weight (calculated)
38621.3 Da
IEP (calculated)
10.966
GRAVY (calculated)
-1.636
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVKSRFRER EDAHPSSQET NLGFYLPPLS DKMPRYDDRH GSTRLYVGRL SSRTRSRDLE DLFSRYGRVR DVDMKHDFAF VEFSDPRDAD DARYSLNGRD
101: FDGSRIIVEF AKGGPRGPGG SREYLGRGPP PGSGRCFNCG IDGHWARDCK AGDWKNKCYR CGERGHIERN CQNSPKKLKR GRSYSRSPSP RRGRSRSRSR
201: SRSYSRSRSY SQPRSSPKRE RSAERLERRS RSPHDSRSPK RRKASPPPSK GRKRSPTPDE RSPKERSPSP RDRKQTTNGS DYSDSPRVKS RSPALDAERD
301: SPRDRNYRRS PDEENGHSRS PSPIPRDDAS PVDDDE
101: FDGSRIIVEF AKGGPRGPGG SREYLGRGPP PGSGRCFNCG IDGHWARDCK AGDWKNKCYR CGERGHIERN CQNSPKKLKR GRSYSRSPSP RRGRSRSRSR
201: SRSYSRSRSY SQPRSSPKRE RSAERLERRS RSPHDSRSPK RRKASPPPSK GRKRSPTPDE RSPKERSPSP RDRKQTTNGS DYSDSPRVKS RSPALDAERD
301: SPRDRNYRRS PDEENGHSRS PSPIPRDDAS PVDDDE
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.