Factsheet for Bra000304.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003034.1-P
Bra003085.1-P
Bra009783.1-P
Bra010714.1-P
Bra012987.1-P
Bra014741.1-P
Bra017974.1-P
Bra020466.1-P
Bra022624.1-P
Bra023114.1-P
Bra024276.1-P
Bra024624.1-P
Bra032082.1-P
Bra033597.1-P
Bra039394.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43370.1	Bra024624.1-P	AT1G23860.1	15987817
AT2G43370.1	Bra032082.1-P	AT2G24590.1	21798944
AT2G43370.1	Bra023114.1-P	AT2G37340.1	15987817
AT2G43370.1	Bra039394.1-P	AT3G13570.1	15987817
AT2G43370.1	Bra017974.1-P	AT3G49580.1	21798944
AT2G43370.1	Bra014741.1-P	AT3G55460.1	15987817
AT2G43370.1	Bra010714.1-P	AT4G39050.1	21798944
AT2G43370.1	Bra033597.1-P	AT4G39050.1	21798944
AT2G43370.1	Bra009783.1-P	AT5G24660.1	21798944
AT2G43370.1	Bra020466.1-P	AT5G24660.1	21798944
AT2G43370.1	Bra003085.1-P	AT5G53060.1	21798944
AT2G43370.1	Bra022624.1-P	AT5G53060.1	21798944
AT2G43370.1	Bra003034.1-P	AT5G53800.1	21798944
AT2G43370.1	Bra012987.1-P	AT5G61010.1	21798944
AT2G43370.1	Bra024276.1-P	AT5G64200.2	15987817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83484	Canola	nucleus	88.16	87.89
CDY44222	Canola	nucleus	81.93	82.45
AT2G43370.1	Thale cress	nucleus	71.96	69.37
GSMUA_Achr8P09080_001	Banana	nucleus	53.89	62.68
KRH01744	Soybean	nucleus	59.5	55.04
VIT_05s0102g00080.t01	Wine grape	nucleus	57.94	54.71
KRH46935	Soybean	nucleus	54.52	53.52
Solyc09g098390.2.1	Tomato	nucleus	57.32	51.83
PGSC0003DMT400055636	Potato	nucleus	56.07	51.14
Os09t0513700-01	Rice	nucleus	55.14	47.2
TraesCS5D01G304800.1	Wheat	nucleus	58.26	44.63
TraesCS5A01G298000.1	Wheat	nucleus	58.57	42.25
EER97037	Sorghum	nucleus	57.32	42.11
TraesCS5B01G297000.2	Wheat	nucleus	58.26	39.79
HORVU5Hr1G078170.27	Barley	nucleus	54.52	37.88
Zm00001d021137_P002	Maize	nucleus	44.55	29.24
Bra012098.1-P	Field mustard	cytosol	9.03	16.29

Protein Annotations

MapMan:16.4.4.1.1	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra000304	EnsemblPlants:Bra000304.1	EnsemblPlants:Bra000304.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0034693	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4C7X6	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253FCE9	SEG:seg	InterPro:snRNP35_RRM	:

Description

AT2G43370 (E=2e-118) | U1 small nuclear ribonucleoprotein 70 kDa, putative

Coordinates

chrA03:+:10434215..10435881

Molecular Weight (calculated)

37079.3 Da

IEP (calculated)

10.492

GRAVY (calculated)

-1.305

Length

321 amino acids

Sequence
(BLAST)

001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPFGDSKAAG DPYCTLFVGR ISHLTTEDTL REAMSKHGKV KSLRMVRHIV
101: TGASRGYAFV EYETEKEMRR AYEDAHHSFI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RERPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EGYYREEERS PVKREGSYHG HRESERAHRR HNKDKEERSR VESRSDRKER SRGREDRYGD KEDVSGSRRS NHGEERPHKR
301: HKHRRLRHHR RSSSRDHHSS D

Best Arabidopsis Sequence Match ( AT2G43370.1 )
(BLAST)

001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD

Arabidopsis Description

SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.