Factsheet for Bra014741.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra005798.1-P
Bra011368.1-P
Bra014741.1-P
Bra016165.1-P
Bra018581.1-P
Bra023114.1-P
Bra024276.1-P
Bra024624.1-P
Bra027459.1-P
Bra030819.1-P
Bra039394.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55460.1	Bra018581.1-P	AT1G09140.1	18674533
AT3G55460.1	Bra024624.1-P	AT1G23860.1	18674533
AT3G55460.1	Bra030819.1-P	AT1G53720.1	16497658
AT3G55460.1	Bra016165.1-P	AT1G71020.1	21798944
AT3G55460.1	Bra023114.1-P	AT2G37340.1	18674533
AT3G55460.1	Bra000304.1-P	AT2G43370.1	15987817
AT3G55460.1	Bra000304.1-P	AT2G43370.1	21798944
AT3G55460.1	Bra039394.1-P	AT3G13570.1	18674533
AT3G55460.1	Bra014741.1-P	AT3G55460.1	18674533
AT3G55460.1	Bra014741.1-P	AT3G55460.1	21798944
AT3G55460.1	Bra011368.1-P	AT4G32660.1	21798944
AT3G55460.1	Bra005798.1-P	AT5G04280.1	21798944
AT3G55460.1	Bra027459.1-P	AT5G42820.1	21798944
AT3G55460.1	Bra024276.1-P	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76092	Canola	plastid	94.24	98.58
CDY02941	Canola	nucleus	92.88	98.56
AT3G55460.1	Thale cress	mitochondrion, nucleus	80.0	90.08
HORVU6Hr1G061320.1	Barley	mitochondrion	32.54	68.09
KRH15102	Soybean	nucleus	60.34	65.68
KRH73034	Soybean	nucleus	60.34	64.49
EES16196	Sorghum	nucleus	56.95	64.12
EES10309	Sorghum	nucleus	57.63	62.96
GSMUA_Achr8P34280_001	Banana	nucleus	57.29	62.83
Os02t0252100-02	Rice	nucleus	55.93	62.26
Os12t0572400-01	Rice	nucleus	55.25	61.98
HORVU7Hr1G118660.4	Barley	nucleus	46.1	59.91
TraesCS4B01G025600.1	Wheat	nucleus	53.56	58.74
TraesCS4A01G289300.1	Wheat	nucleus	52.88	58.65
HORVU4Hr1G003820.8	Barley	nucleus	52.88	58.65
GSMUA_Achr1P17340_001	Banana	nucleus	53.22	58.58
HORVU4Hr1G058060.2	Barley	mitochondrion, nucleus	45.42	58.26
TraesCS4D01G022700.1	Wheat	nucleus	53.56	58.09
Zm00001d048609_P001	Maize	nucleus, plastid	55.93	57.29
HORVU2Hr1G073490.2	Barley	cytosol, nucleus	31.86	56.29
TraesCS5D01G093200.1	Wheat	nucleus, plastid	54.92	54.73
TraesCS5B01G087000.2	Wheat	nucleus, plastid	54.92	54.73
TraesCS5A01G079000.1	Wheat	nucleus	54.58	54.39
HORVU5Hr1G021180.4	Barley	nucleus, plastid	54.58	53.49
HORVU6Hr1G034010.3	Barley	nucleus	47.46	53.44
VIT_13s0019g01060.t01	Wine grape	nucleus	62.03	51.84
Bra034794.1-P	Field mustard	nucleus	32.88	46.86
Bra039394.1-P	Field mustard	nucleus	39.32	44.11
Zm00001d030739_P002	Maize	mitochondrion, nucleus, plastid	54.58	43.63
Bra037991.1-P	Field mustard	nucleus	30.85	36.84
Bra011910.1-P	Field mustard	nucleus	38.64	35.74
Bra024276.1-P	Field mustard	nucleus	31.19	32.86
Bra030870.1-P	Field mustard	plastid	15.25	24.86
Os11t0704700-01	Rice	nucleus	39.66	22.9
TraesCS4A01G176000.13	Wheat	nucleus	48.47	15.71
TraesCS4D01G136700.4	Wheat	nucleus	47.12	15.33
TraesCS4B01G141700.1	Wheat	nucleus	34.24	12.72
HORVU4Hr1G027820.11	Barley	nucleus, plastid	46.1	12.43

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra014741	EnsemblPlants:Bra014741.1	EnsemblPlants:Bra014741.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0016607	GO:GO:0042802	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4DE22
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002544B17	SEG:seg	:

Description

AT3G55460 (E=5e-048) SCL30 | SCL30; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA04:-:2725835..2728005

Molecular Weight (calculated)

33482.8 Da

IEP (calculated)

11.876

GRAVY (calculated)

-1.537

Length

295 amino acids

Sequence
(BLAST)

001: MSRRYSPPYY SPPRRGYGGR GRSPPYYSPP RRGYGGRGRS PPPPPPSRRG YGGGGRKGSS HGSLLVRNIP LDCRPEELRV PFERFGPVRD VYIPRDYYSG
101: EPRGFAFVEF VDAYDAGEAQ RSMNRRIFGG REITVVVASE SRKRPEEMRV KTRTRSREPS GSRGRSHGRS RSRSISRSRS PRRPSDSRSR RRSRSYSPAP
201: RRRGADYSAS PRRRQEERPR SPLRSPPRGE GDAKYSRRSY SPGYEGAAAG DRDANGDNET REKPDYEPEE RRRGGREVSR SPSGSRSRSV EASPR

Best Arabidopsis Sequence Match ( AT3G55460.1 )
(BLAST)

001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR

Arabidopsis Description

SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.