Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010569.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42820.1 | Bra010569.1-P | AT4G36690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95151 | Canola | nucleus | 96.22 | 99.64 |
| CDY52374 | Canola | nucleus | 96.22 | 97.9 |
| AT5G42820.1 | Thale cress | nucleus | 91.41 | 93.99 |
| GSMUA_Achr11P... | Banana | cytosol | 58.08 | 82.04 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 76.29 | 81.62 |
| Zm00001d041639_P001 | Maize | cytosol | 47.42 | 80.23 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 68.38 | 78.66 |
| KRH49506 | Soybean | nucleus | 72.16 | 77.49 |
| KRG89181 | Soybean | nucleus | 69.76 | 75.75 |
| Os01t0667800-01 | Rice | cytosol | 53.61 | 75.36 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 67.01 | 71.69 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 68.73 | 71.68 |
| Bra010926.1-P | Field mustard | nucleus | 70.45 | 71.68 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 69.07 | 71.53 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 68.04 | 70.97 |
| OQU87301 | Sorghum | nucleus | 70.1 | 70.83 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 68.04 | 70.46 |
| Zm00001d020954_P001 | Maize | nucleus | 67.7 | 68.64 |
| KXG35922 | Sorghum | nucleus | 66.67 | 67.83 |
| Zm00001d007784_P001 | Maize | plastid | 68.73 | 66.89 |
| Bra030057.1-P | Field mustard | nucleus | 58.76 | 66.8 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 67.01 | 66.55 |
| Os05t0564200-01 | Rice | nucleus | 69.42 | 66.45 |
| EES18681 | Sorghum | nucleus | 69.42 | 65.8 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 69.07 | 65.47 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 68.38 | 65.46 |
| Os09t0491756-01 | Rice | nucleus | 64.6 | 64.83 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 64.6 | 60.26 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 64.95 | 60.19 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 67.01 | 60.0 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 64.6 | 59.68 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 67.01 | 59.63 |
| Bra019944.1-P | Field mustard | nucleus | 23.37 | 13.28 |
| Bra018446.1-P | Field mustard | nucleus | 29.21 | 11.38 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | EnsemblPlantsGene:Bra027459 | EnsemblPlants:Bra027459.1 | EnsemblPlants:Bra027459.1-P | GO:GO:0000003 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0048573 |
| GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | UniProt:M4EF97 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 |
| PANTHER:PTHR12620:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00361 |
| SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0001CAA445 | InterPro:Znf_CCCH | SEG:seg | : |
Description
AT5G42820 (E=3e-100) ATU2AF35B, U2AF35B | U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding
Coordinates
chrA09:+:14179281..14180156
Molecular Weight (calculated)
33844.6 Da
IEP (calculated)
9.957
GRAVY (calculated)
-1.152
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQAHFED FYEDIFEELD KFGEMESLNV
101: CDNLADHMIG NVYVLFKEED QAAAALKALQ GRFYSGRPII ADFSPVTDFR EATCRQYEED NCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSRSVSPRRK RERGERGGDV RERGDVRERD RHGNGKRSSD RSERHDRDGG GGGRRRHGSP RRSRSPVVVR EGSEERRARI EQWNKERDEG V
101: CDNLADHMIG NVYVLFKEED QAAAALKALQ GRFYSGRPII ADFSPVTDFR EATCRQYEED NCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSRSVSPRRK RERGERGGDV RERGDVRERD RHGNGKRSSD RSERHDRDGG GGGRRRHGSP RRSRSPVVVR EGSEERRARI EQWNKERDEG V
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.