Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007635_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42820.1 | Zm00001d007635_P004 | AT4G36690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG35922 | Sorghum | nucleus | 95.12 | 95.45 |
| Zm00001d041639_P001 | Maize | cytosol | 49.48 | 82.56 |
| Os09t0491756-01 | Rice | nucleus | 82.23 | 81.38 |
| GSMUA_Achr11P... | Banana | cytosol | 56.45 | 78.64 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 67.94 | 77.08 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 71.78 | 75.74 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 81.53 | 75.0 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 81.53 | 74.29 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 81.18 | 74.2 |
| KRG89181 | Soybean | nucleus | 68.64 | 73.51 |
| KRH49506 | Soybean | nucleus | 67.94 | 71.96 |
| AT5G42820.1 | Thale cress | nucleus | 69.69 | 70.67 |
| CDX95151 | Canola | nucleus | 68.64 | 70.11 |
| CDY52374 | Canola | nucleus | 68.64 | 68.88 |
| Zm00001d007784_P001 | Maize | plastid | 71.43 | 68.56 |
| Bra027459.1-P | Field mustard | nucleus | 68.64 | 67.7 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 71.43 | 67.43 |
| AT1G27650.1 | Thale cress | nucleus | 68.99 | 66.89 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 71.43 | 66.78 |
| CDY03934 | Canola | nucleus | 56.1 | 65.98 |
| Bra010926.1-P | Field mustard | nucleus | 65.51 | 65.73 |
| CDY46291 | Canola | nucleus | 32.06 | 65.71 |
| CDY60278 | Canola | nucleus | 55.4 | 65.43 |
| CDY11775 | Canola | nucleus | 65.85 | 65.17 |
| CDX90100 | Canola | nucleus | 64.81 | 65.03 |
| Bra030057.1-P | Field mustard | nucleus | 55.75 | 62.5 |
| CDY21244 | Canola | nucleus | 35.19 | 61.59 |
| Zm00001d016836_P002 | Maize | nucleus | 29.62 | 11.2 |
Protein Annotations
| EntrezGene:100272749 | MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | UniProt:B4FQ72 | EMBL:BT039260 | EMBL:BT039340 |
| EMBL:BT066282 | ncoils:Coil | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 |
| InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM55932.1 | PFAM:PF00076 | PFAM:PF00642 |
| PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF13 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small |
| UniParc:UPI00017B7B7B | EnsemblPlantsGene:Zm00001d020954 | EnsemblPlants:Zm00001d020954_P001 | EnsemblPlants:Zm00001d020954_T001 | InterPro:Znf_CCCH | SEG:seg |
Description
C3H-transcription factor 340Splicing factor U2af small subunit A
Coordinates
chr7:+:137626105..137626968
Molecular Weight (calculated)
33669.1 Da
IEP (calculated)
9.170
GRAVY (calculated)
-1.117
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNKP SISPTLLLCN MYQRPDMITP GVDAQGNPID PERIQEDFED FYEDIFVELS KHGEIESLHV
101: CDNLADHMIG NVYVEFREEE QAARALQALQ GRYYSGRPII AEFSPVTDFR EATCRQFEEH SCNRGGYCNF MHVKQVGRDL RRKLFGHLHR SLRSHSRGSR
201: SPSPYRRRGS SSRSRDRDDY HDYYYHYYRS GSGSRRSSER HRSHDSDGSR RRRGRSRSRS RSPVREGSEE RRAKIEQWNR EREAAQV
101: CDNLADHMIG NVYVEFREEE QAARALQALQ GRYYSGRPII AEFSPVTDFR EATCRQFEEH SCNRGGYCNF MHVKQVGRDL RRKLFGHLHR SLRSHSRGSR
201: SPSPYRRRGS SSRSRDRDDY HDYYYHYYRS GSGSRRSSER HRSHDSDGSR RRRGRSRSRS RSPVREGSEE RRAKIEQWNR EREAAQV
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.