Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42820.1 | KRH56450 | AT4G36690.1 | 21798944 |
| AT5G42820.1 | KRH64800 | AT4G36690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH49506 | Soybean | nucleus | 85.07 | 84.13 |
| Zm00001d041639_P001 | Maize | cytosol | 52.61 | 81.98 |
| GSMUA_Achr11P... | Banana | cytosol | 61.94 | 80.58 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 73.51 | 77.87 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 78.36 | 77.21 |
| Os01t0667800-01 | Rice | cytosol | 57.84 | 74.88 |
| AT5G42820.1 | Thale cress | nucleus | 75.75 | 71.73 |
| CDX95151 | Canola | nucleus | 74.63 | 71.17 |
| AT1G27650.1 | Thale cress | nucleus | 78.36 | 70.95 |
| CDY52374 | Canola | nucleus | 74.63 | 69.93 |
| Bra027459.1-P | Field mustard | nucleus | 75.75 | 69.76 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 72.39 | 69.53 |
| KXG35922 | Sorghum | nucleus | 73.51 | 68.88 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 71.64 | 68.82 |
| Zm00001d020954_P001 | Maize | nucleus | 73.51 | 68.64 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 69.4 | 68.38 |
| HORVU3Hr1G061060.2 | Barley | nucleus | 71.64 | 68.33 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 71.27 | 67.97 |
| OQU87301 | Sorghum | nucleus | 72.76 | 67.71 |
| CDY11775 | Canola | nucleus | 73.13 | 67.59 |
| Bra010926.1-P | Field mustard | nucleus | 71.64 | 67.13 |
| Os09t0491756-01 | Rice | nucleus | 72.39 | 66.9 |
| CDX90100 | Canola | nucleus | 70.9 | 66.43 |
| CDY03934 | Canola | nucleus | 60.07 | 65.98 |
| CDY60278 | Canola | nucleus | 58.96 | 65.02 |
| CDY46291 | Canola | nucleus | 33.96 | 65.0 |
| Zm00001d007784_P001 | Maize | plastid | 72.39 | 64.88 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 69.78 | 63.82 |
| EES18681 | Sorghum | nucleus | 72.39 | 63.19 |
| Zm00001d009570_P001 | Maize | nucleus, plastid | 71.64 | 63.16 |
| Bra030057.1-P | Field mustard | nucleus | 60.07 | 62.89 |
| Zm00001d039014_P001 | Maize | extracellular, plasma membrane, plastid | 72.01 | 62.87 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 72.76 | 62.5 |
| Os05t0564200-01 | Rice | nucleus | 70.9 | 62.5 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 72.39 | 61.59 |
| HORVU5Hr1G073680.1 | Barley | nucleus | 71.64 | 61.15 |
| KRH26573 | Soybean | nucleus | 69.78 | 59.37 |
| CDY21244 | Canola | nucleus | 35.82 | 58.54 |
| HORVU1Hr1G087660.2 | Barley | nucleus | 69.4 | 57.23 |
| TraesCS1B01G425600.2 | Wheat | nucleus | 69.78 | 57.19 |
| KRG96125 | Soybean | nucleus | 66.42 | 56.69 |
| KRH67839 | Soybean | endoplasmic reticulum, nucleus | 66.42 | 56.69 |
| KRH13511 | Soybean | nucleus | 25.75 | 16.87 |
| KRH43656 | Soybean | nucleus | 30.97 | 13.86 |
Protein Annotations
| EntrezGene:100792507 | MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | EMBL:ACUP02012190 | EnsemblPlantsGene:GLYMA_20G006800 | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0030628 | GO:GO:0046872 | GO:GO:0089701 | UniProt:I1ND08 | InterPro:IPR000504 |
| InterPro:IPR000571 | InterPro:IPR012677 | EnsemblPlants:KRG89181 | ProteinID:KRG89181 | ProteinID:KRG89181.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 |
| PANTHER:PTHR12620:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00361 |
| SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0001CA9CB7 | InterPro:Znf_CCCH | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr20:+:657349..658818
Molecular Weight (calculated)
31281.7 Da
IEP (calculated)
10.210
GRAVY (calculated)
-1.101
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP SISPTLLLSN MYQRPDMITP GVDPQGQTLD PRKIQQHFED FYEDIFTELA KFGEIESLNV
101: CDNLADHMIG NVYVQFREED QAAKALHALR GRFYNARPII ADFSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKLIGRDL RRRLFGRNHR GGSGTYHRVS
201: RSRSRSRSAS PRYRRERRES DSRGGRRSRE RDGSGGRRRQ HGSPPAREGS EERRARIEQW NREREENK
101: CDNLADHMIG NVYVQFREED QAAKALHALR GRFYNARPII ADFSPVTDFR EATCRQFEEN SCNRGGYCNF MHVKLIGRDL RRRLFGRNHR GGSGTYHRVS
201: RSRSRSRSAS PRYRRERRES DSRGGRRSRE RDGSGGRRRQ HGSPPAREGS EERRARIEQW NREREENK
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.