CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066830.1.1	Tomato	nucleus	78.41	79.94
PGSC0003DMT400068224	Potato	nucleus	78.73	74.92
KRH49506	Soybean	nucleus	60.63	70.48
KRG89181	Soybean	nucleus	59.37	69.78
KRG96125	Soybean	nucleus	62.86	63.06
KRH67839	Soybean	endoplasmic reticulum, nucleus	62.86	63.06
KRH13511	Soybean	nucleus	22.22	17.11
KRH43656	Soybean	nucleus	26.35	13.86

Protein Annotations

EntrezGene:100794975	MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	EMBL:ACUP02007721	EnsemblPlantsGene:GLYMA_12G181300	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030628	GO:GO:0046872	GO:GO:0089701	UniProt:I1LTR2	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	EnsemblPlants:KRH26573	ProteinID:KRH26573	ProteinID:KRH26573.1	ProteinID:KRH26574.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR12620	PANTHER:PTHR12620:SF17	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356
SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI0001CAA6A6	InterPro:Znf_CCCH
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:34187891..34191566

Molecular Weight (calculated)

37106.9 Da

IEP (calculated)

9.353

GRAVY (calculated)

-1.360

Length

315 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP SISPTILLSN MYQRPDMITP GVDAHGHPID PRKIQDHFEE FYEDLFDELS KYGDIESLNV
101: CDNLADHMVG NVYVQFREEE HAANAVRNLT GRFYAGRPII VDFSPVTDFR EATCRQYEEN TCNRGGYCNF MHLKRISREL RRQLFGKSHG RHSRSRSRSP
201: YRHRSHEERS HRSHSRKYDD RDHHHESRSR RHRSTSPRHR RGRSRSRSPG GRRHHSPVRD GSEERRARIE QWNREREDQE PGYKVNAEEI NNGNASKHHG
301: HQQQEQEPQS PQEGQ

Best Arabidopsis Sequence Match ( AT1G27650.2 )
(BLAST)

001: MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR
101: EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER
201: DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.