CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96125	Soybean	nucleus	96.5	96.5
GSMUA_Achr11P...	Banana	nucleus	56.05	75.54
KRH49506	Soybean	nucleus	57.32	66.42
KRG89181	Soybean	nucleus	56.69	66.42
KRH26573	Soybean	nucleus	63.06	62.86
Solyc10g083640.1.1	Tomato	nucleus	66.24	59.43
PGSC0003DMT400072640	Potato	nucleus	44.59	51.28
VIT_08s0007g03950.t01	Wine grape	nucleus	61.47	50.26
KRH13511	Soybean	nucleus	20.7	15.89
KRH43656	Soybean	nucleus	25.16	13.19

Protein Annotations

EntrezGene:100811622	MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	EMBL:ACUP02002083	EnsemblPlantsGene:GLYMA_03G190600	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030628	GO:GO:0046872	GO:GO:0089701	UniProt:I1JPW6	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	EnsemblPlants:KRH67839	ProteinID:KRH67839	ProteinID:KRH67839.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620
PANTHER:PTHR12620:SF17	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00360
SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI00023394A4	InterPro:Znf_CCCH	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:40127036..40129779

Molecular Weight (calculated)

36253.1 Da

IEP (calculated)

9.787

GRAVY (calculated)

-1.193

Length

314 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP TISPTLVLSN MYQRPDMNMS IITNPDQPQP QSLDPDKVQD HFDDFYEDLF EELSKYGPIQ
101: SLNICDNLAD HMVGNVYVQF REEDHAANAL MNLTGRFYSG RPIIVDFSPV TDFREATCRQ YEENVCNRGG YCNFMHLKKI SRDLRRKLFG RNRRWNGRSG
201: SRSRSPPRNR NHGENSHSGR GSGRRDFDRS HGPHGRRPRS RSPRYRGKRS RSPVGRDRSP PIRESSAERR AKIEQWNREK EQGDTGNMNN SKSSDDYQEQ
301: SVAQNGSESG NHQI

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.