CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67839	Soybean	endoplasmic reticulum, nucleus	96.5	96.5
GSMUA_Achr11P...	Banana	nucleus	55.73	75.11
KRH49506	Soybean	nucleus	57.32	66.42
KRG89181	Soybean	nucleus	56.69	66.42
KRH26573	Soybean	nucleus	63.06	62.86
Solyc10g083640.1.1	Tomato	nucleus	65.61	58.86
PGSC0003DMT400072640	Potato	nucleus	43.95	50.55
VIT_08s0007g03950.t01	Wine grape	nucleus	61.47	50.26
KRH13511	Soybean	nucleus	20.38	15.65
KRH43656	Soybean	nucleus	24.52	12.85

Protein Annotations

EntrezGene:100783847	MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	EMBL:ACUP02012146	EnsemblPlantsGene:GLYMA_19G191100	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030628	GO:GO:0046872	GO:GO:0089701	UniProt:I1NAI8	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR012677	EnsemblPlants:KRG96125	ProteinID:KRG96125	ProteinID:KRG96125.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620
PANTHER:PTHR12620:SF17	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00360
SMART:SM00361	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI0001CAB4B7	InterPro:Znf_CCCH	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:44848044..44850631

Molecular Weight (calculated)

36450.4 Da

IEP (calculated)

9.878

GRAVY (calculated)

-1.226

Length

314 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP TISPTLVLSN MYQRPDMNMN IITNPDQPQP QSLDPDKVQD HFDDFYEDLF EELSKYGPIQ
101: SLNICDNLAD HMVGNVYVQF REEDHAANAL MNLTGRFYSG RPIIVDFSPV TDFREATCRQ YEENVCNRGG YCNFMHLKKI SRDLRRKLFG RNRRWNGRSG
201: SRSKSPPRNR NHGEHLHSGR GSGRRDFDRS HGHHGRRPRS RSPRYRGKRS RSPVGRDRSP PIRENSAERR AKIEQWNREK EQGETSNKNN TKSNDDYQEQ
301: SVAQNGSESG NHQI

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.