Factsheet for Solyc10g083640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072640	Potato	nucleus	75.14	96.34
GSMUA_Achr11P...	Banana	nucleus	53.71	80.69
Solyc11g066830.1.1	Tomato	nucleus	65.14	73.79
KRH67839	Soybean	endoplasmic reticulum, nucleus	59.43	66.24
KRG96125	Soybean	nucleus	58.86	65.61
VIT_08s0007g03950.t01	Wine grape	nucleus	59.71	54.43
Solyc01g103090.2.1	Tomato	nucleus	24.29	10.83

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030628	GO:GO:0046872
GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	UniProt:K4D3F1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620
PANTHER:PTHR12620:SF17	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00360
SMART:SM00361	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc10g083640.1	EnsemblPlants:Solyc10g083640.1.1	InterPro:U2AF_small	UniParc:UPI0002769F2D
InterPro:Znf_CCCH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:63431893..63435584

Molecular Weight (calculated)

40346.6 Da

IEP (calculated)

9.674

GRAVY (calculated)

-1.348

Length

350 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP SISPTLVLSN MYQRPDMITP GVDPQGQPLD PRQIQRHFED FYEDLFEELS KYGEIENLNI
101: CDNLADHMVG NVYVQFREED HAASALQNLT GRFYAGRPII VDFSPVTDFR EATCRQYEEN VCNRGGYCNF MHLKKISREL RRQLFGKSSR RRRSHSRSRS
201: PRGNRNYEEQ RPQGGRGFGR RGGGGGGDRY HDRGRRPRSR SPGRRSGHSR SPGGRRNRSP IREGSEERRA KIEQWNREKE ETGSGRNHGG GARREDREGS
301: AERRAKIEQW NREKEEADSA KYGNFDADNG RNDGGDHYGE QFDDGYPKQQ

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.