Factsheet for Solyc11g066830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068224	Potato	nucleus	98.06	91.54
KRH26573	Soybean	nucleus	79.94	78.41
Solyc10g083640.1.1	Tomato	nucleus	73.79	65.14
Solyc01g103090.2.1	Tomato	nucleus	26.54	10.45

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030628
GO:GO:0046872	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	UniProt:K4D9U0
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR12620	PANTHER:PTHR12620:SF17	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356
SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc11g066830.1	EnsemblPlants:Solyc11g066830.1.1	InterPro:U2AF_small
UniParc:UPI000276A14E	InterPro:Znf_CCCH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:52642370..52646091

Molecular Weight (calculated)

36481.0 Da

IEP (calculated)

8.945

GRAVY (calculated)

-1.328

Length

309 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP SISPTILLSN MYQRPDSITP GVDAQGNPID PRKIQEHFED FYEDLFEELN KYGEIESLNI
101: CDNLADHMVG NVYVQFSEEE QAANALKNLT GRFYAGRPII VDFSPVTDFR EATCRQYEEN VCNRGGYCNF MHLKKISREL RRQLFGRYRT RHSRSRSRSP
201: YRHRSYEDRS HRSHSRKHDE RDHYYESRSR RNRSTSPDHR RGRSRSPGGR RDRSPVRDGS EERRARIEQW NREKEQAELD NRANADSNYK NESNENGSAP
301: NQDQYYNQQ

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.