Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g066830.1.1 | Tomato | nucleus | 91.54 | 98.06 |
| PGSC0003DMT400092352 | Potato | cytosol | 32.93 | 78.99 |
| KRH26573 | Soybean | nucleus | 74.92 | 78.73 |
| PGSC0003DMT400072640 | Potato | nucleus | 47.43 | 57.51 |
| PGSC0003DMT400053361 | Potato | nucleus | 26.59 | 11.56 |
Protein Annotations
| EntrezGene:102590524 | MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 |
| InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | UniProt:M1CIM7 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00642 | EnsemblPlantsGene:PGSC0003DMG400026524 | PGSC:PGSC0003DMG400026524 | EnsemblPlants:PGSC0003DMT400068224 | PRINTS:PR01848 | PFscan:PS50102 |
| PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF17 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00356 | SMART:SM00361 | SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI0002968327 | InterPro:Znf_CCCH |
| SEG:seg | : | : | : | : | : |
Description
Splicing factor U2af small subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400026524]
Coordinates
chr11:+:39730548..39733824
Molecular Weight (calculated)
38991.1 Da
IEP (calculated)
9.925
GRAVY (calculated)
-1.358
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP SISPTILLSN MYQRPDSITP GVDAQGNPID PRKIQEHFED FYEDLFEELN KYGEIESLNI
101: CDNLADHMVG NVYVQFREEE QAANALKNLT GRFYAGDRTA KANGKEEASA KRQRVVTRRP IIVDFSPVTD FREATCRQYE ENVCNRGGYC NFMHLKKISR
201: ELRRQLFGRY RRRQSRSRSR SPYRHRSYED RSHRSHSRKH DERDHYYESR SRRNRSTSPD HKRGRSRSPG GRRDRSPVRD GSEERRARIE QWNREKEQAE
301: LGNRANADSN YKNESNRNGS APNQDQYYNQ Q
101: CDNLADHMVG NVYVQFREEE QAANALKNLT GRFYAGDRTA KANGKEEASA KRQRVVTRRP IIVDFSPVTD FREATCRQYE ENVCNRGGYC NFMHLKKISR
201: ELRRQLFGRY RRRQSRSRSR SPYRHRSYED RSHRSHSRKH DERDHYYESR SRRNRSTSPD HKRGRSRSPG GRRDRSPVRD GSEERRARIE QWNREKEQAE
301: LGNRANADSN YKNESNRNGS APNQDQYYNQ Q
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.