CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES08974
KXG28995
KXG29128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	EES08974	AT4G36690.1	21798944
AT5G42820.1	KXG28995	AT4G36690.1	21798944
AT5G42820.1	KXG29128	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020954_P001	Maize	nucleus	95.45	95.12
Os09t0491756-01	Rice	nucleus	82.17	81.03
GSMUA_Achr11P...	Banana	cytosol	56.99	79.13
GSMUA_Achr9P12340_001	Banana	cytosol	68.53	77.47
TraesCS5D01G275300.1	Wheat	nucleus	82.52	75.64
VIT_18s0122g00480.t01	Wine grape	nucleus	71.68	75.37
TraesCS5A01G267500.1	Wheat	nucleus	82.52	74.92
HORVU5Hr1G073680.1	Barley	nucleus	82.17	74.84
KRG89181	Soybean	nucleus	68.88	73.51
KRH49506	Soybean	nucleus	68.18	71.96
AT5G42820.1	Thale cress	nucleus	68.88	69.61
CDX95151	Canola	nucleus	68.18	69.39
OQU87301	Sorghum	nucleus	69.58	69.1
CDY52374	Canola	nucleus	68.18	68.18
EES18681	Sorghum	nucleus	72.03	67.1
AT1G27650.1	Thale cress	nucleus	69.23	66.89
Bra027459.1-P	Field mustard	nucleus	67.83	66.67
Bra010926.1-P	Field mustard	nucleus	65.73	65.73
CDY11775	Canola	nucleus	66.08	65.17
CDX90100	Canola	nucleus	65.03	65.03
CDY46291	Canola	nucleus	31.82	65.0
CDY03934	Canola	nucleus	55.24	64.75
CDY60278	Canola	nucleus	54.9	64.61
Bra030057.1-P	Field mustard	nucleus	55.24	61.72
CDY21244	Canola	nucleus	33.92	59.15
OQU85120	Sorghum	nucleus, plastid	28.32	10.56

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	UniProt:A0A1B6QDD4	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872
GO:GO:0050662	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	ProteinID:KXG35919.1
ProteinID:KXG35920.1	ProteinID:KXG35921.1	EnsemblPlants:KXG35922	ProteinID:KXG35922	ProteinID:KXG35922.1	ProteinID:KXG35928.2
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR12620	PANTHER:PTHR12620:SF13	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356
SMART:SM00361	EnsemblPlantsGene:SORBI_3002G249500	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI00022070B8	InterPro:Znf_CCCH
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:63669429..63671498

Molecular Weight (calculated)

33550.8 Da

IEP (calculated)

8.877

GRAVY (calculated)

-1.186

Length

286 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNKP SISPTLLLCN MYQRPDMITP GVDAQGNPID PERIQEDFED FYEDIFEELS KHGEIESLHV
101: CDNLADHMIG NVYVQFREEE QAARALQALQ GRYYSGRPII AEFSPVTDFR EATCRQFEEH SCNRGGYCNF MHVKQVGRDL RRKLFGHLHR SHRSHSRGSR
201: SPSPYRRHGS SSRSRDRDDD HDYYYHYRSG SGSRRSSERH RSHDSDGSRR RRGRSRSRSK SPWREGSEER RAKIEQWNRE REAAQV

Best Arabidopsis Sequence Match ( AT1G27650.1 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.