CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91800
EER95096
EER97813
EER99208
EES01601
KXG22269
KXG36793
OQU80770

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	EES01601	AT1G28360.1	21798944
AT4G36690.1	KXG22269	AT1G28360.1	21798944
AT4G36690.1	EER97813	AT2G39760.1	21798944
AT4G36690.1	EER91800	AT3G50670.1	21798944
AT4G36690.1	EER95096	AT3G50670.1	21798944
AT4G36690.1	KXG36793	AT5G49400.1	21798944
AT4G36690.1	EER99208	AT5G51910.1	21798944
AT4G36690.1	OQU80770	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048655_P012	Maize	extracellular, nucleus	93.03	94.06
PGSC0003DMT400040069	Potato	cytosol	45.14	79.1
CDY12868	Canola	mitochondrion	32.84	78.51
TraesCS4D01G143400.3	Wheat	nucleus	77.61	77.05
HORVU4Hr1G029030.3	Barley	nucleus	77.61	76.91
CDY67096	Canola	mitochondrion	34.68	76.52
GSMUA_Achr4P16510_001	Banana	nucleus	64.22	74.15
CDX75589	Canola	mitochondrion	47.16	72.39
Bra040973.1-P	Field mustard	nucleus	35.96	72.06
TraesCS4A01G171800.3	Wheat	nucleus	75.96	71.26
TraesCSU01G068100.3	Wheat	nucleus	75.78	71.21
KXG28995	Sorghum	nucleus	74.5	67.67
GSMUA_Achr4P11020_001	Banana	nucleus	69.91	66.15
VIT_04s0023g01450.t01	Wine grape	nucleus	67.89	65.49
AT1G60830.2	Thale cress	nucleus	13.21	64.86
CDY40492	Canola	nucleus	17.61	64.0
CDY55407	Canola	nucleus	13.03	63.39
CDY40481	Canola	nucleus	59.63	62.98
Solyc02g085570.2.1	Tomato	nucleus	64.4	62.9
CDY12869	Canola	nucleus	56.88	62.5
PGSC0003DMT400033041	Potato	nucleus	63.67	62.41
Solyc02g062920.2.1	Tomato	nucleus	63.49	61.79
Bra027119.1-P	Field mustard	nucleus	55.41	61.51
CDY35472	Canola	nucleus	62.02	61.45
CDY24773	Canola	nucleus	62.39	61.37
Bra010569.1-P	Field mustard	nucleus	62.39	61.37
VIT_13s0139g00410.t01	Wine grape	cytosol	7.52	60.29
KRH64800	Soybean	nucleus	65.87	59.83
CDY46188	Canola	nucleus	64.04	58.75
Bra031477.1-P	Field mustard	nucleus	64.04	58.75
AT1G60900.1	Thale cress	nucleus	63.3	58.57
AT4G36690.1	Thale cress	nucleus	61.47	58.46
KRH56450	Soybean	nucleus	64.4	58.02
CDY03767	Canola	nucleus	64.22	57.66
Bra040940.1-P	Field mustard	nucleus	59.45	57.65
CDY66742	Canola	nucleus	58.9	56.61
CDY40493	Canola	nucleus	28.99	56.23
Solyc12g008750.1.1	Tomato	nucleus	60.92	54.7
CDY30313	Canola	nucleus	58.53	54.25
PGSC0003DMT400000919	Potato	nucleus	60.0	54.05
CDY55589	Canola	mitochondrion	24.77	53.78
Bra031341.1-P	Field mustard	nucleus	24.22	52.59
Bra010656.1-P	Field mustard	mitochondrion, plastid	24.4	52.57
KXG29128	Sorghum	nucleus	57.25	49.29
VIT_13s0139g00390.t01	Wine grape	plasma membrane	10.46	36.54
OQU93274	Sorghum	nucleus	21.28	11.97

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EntrezGene:8070230	UniProt:C5Y7Z5	EnsemblPlants:EES08974	ProteinID:EES08974
ProteinID:EES08974.1	GO:GO:0000243	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008187	GO:GO:0008380	GO:GO:0009987
GO:GO:0016607	GO:GO:0030628	GO:GO:0071004	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	EnsemblPlantsGene:SORBI_3005G216300	SUPFAM:SSF54928
unigene:Sbi.3691	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0001A863C7	RefSeq:XP_002449986.1	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:70199580..70205058

Molecular Weight (calculated)

60338.7 Da

IEP (calculated)

8.768

GRAVY (calculated)

-0.879

Length

545 amino acids

Sequence
(BLAST)

001: MADDPTTGGG GGEGGDRVED VVRAEGETQP HDDGSSKSKD REKDREKDKD RDRRRDRDRD RGRDRDRDRD RDRDRDRDRD RDKDRQSRHH RERREPRDRP
101: DDHRGRDSER RRERDRDGHR RHRSRSRSRG RDRRSRSRSR SKRVSGFDAP PPQAMGSPFP VIPTPSQLPG TSLPNIGGMF PNMLPFGVAG QFNPLVIQPQ
201: AMTQQATRHA RRVYVGGLPP SANEQTVAVY FNQVMAAIGG NTAGPGDAVL NVYINHDKKF AFVEMRSVEE ASNAMALDGI MFEGAPVKVR RPTDYNPSLA
301: AALGPSQPSP NLNLAAVGLT AGSTGGLEGP DRIFVGGLPY YFTEAQVREL LESFGPLRGF DLVKDRETGN SKGYAFCVYQ DLTVTDIACA ALNGIKMGDK
401: TLTVRRANQG ASQPRPEQES ILLQAQQQVQ LQKLVYQVGA LPTKVVCLTQ VVTADELKDD EEYEDIMEDM RLEAGKYGTL VKVIIPRPDP SGQPVAGVGK
501: VFLEYADIDG AAKAKTALHG RKFGGNPVVA VCYAEDKFAN GEYDG

Best Arabidopsis Sequence Match ( AT4G36690.4 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.