Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048364_P002 | Maize | nucleus | 88.75 | 88.11 |
| Os03t0138100-01 | Rice | nucleus | 31.68 | 47.74 |
| CDX84685 | Canola | nucleus | 12.9 | 33.6 |
| GSMUA_Achr11P... | Banana | nucleus | 13.83 | 28.21 |
| KRH69095 | Soybean | nucleus | 8.57 | 27.85 |
| VIT_05s0049g01490.t01 | Wine grape | nucleus | 27.97 | 27.62 |
| KRH31685 | Soybean | nucleus | 25.39 | 24.97 |
| Solyc09g090420.2.1 | Tomato | nucleus | 27.04 | 23.71 |
| EES08974 | Sorghum | nucleus | 11.97 | 21.28 |
| CDX79530 | Canola | nucleus | 25.7 | 20.68 |
| Bra022941.1-P | Field mustard | nucleus | 26.21 | 20.14 |
| KXG28995 | Sorghum | nucleus | 11.15 | 18.0 |
| AT2G33435.1 | Thale cress | nucleus | 24.05 | 17.58 |
| KXG29128 | Sorghum | nucleus | 8.88 | 13.59 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:8080599 | UniProt:C5WYY2 | ProteinID:EER92893.1 | GO:GO:0000243 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0008187 | GO:GO:0016607 | GO:GO:0030628 |
| GO:GO:0071004 | GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlants:OQU93274 |
| ProteinID:OQU93274 | ProteinID:OQU93274.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF56 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3001G511500 | SUPFAM:SSF54928 | unigene:Sbi.11828 |
| UniParc:UPI0001A82C30 | RefSeq:XP_002465895.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:77897527..77906125
Molecular Weight (calculated)
108181.0 Da
IEP (calculated)
8.165
GRAVY (calculated)
-0.958
Length
969 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRKIHGEND SERITSEGTA ARTRPLSIKD IMLRREKKAA SESKKAKEGL ENGKGKSTHL EQGREHKSRK DARDMPVEGS RKEKSRDATR EGSKKEKPRH
101: IPRENPKKED TRYAPKEVSK KDNSRDRPNT GAKMDDLKDA PKVPEKEGLG DAPKKASKKQ RPSGDDNHSV RKDKDIHHSQ KLVTNMSGRA DESKDRNLSE
201: IRERKGDVMR SEYQKEPGKR WNDEAVGDDK IKFKSEKLRN ETKRKDRSFD NERSPEVDRP MSKKQDSAWF QDSKHSDRYA GRNEYAKPYH GEPGFKRRRS
301: RSRDHDRERY GRSISPPLRE ERYNYRGRDF GNYPPHYSME KSRRKYAEVD KQKLSGSGGY IGGSHQKYES RLGGYSPRKK KTSLQAEQAT TKTPSKVIQS
401: PEKKSATWDQ PPVKANQSNF PTTFLPTVGQ MAPIPFSFST IKKDPSTTVE TMLVGNSLTA DSVQLTQATR PLRRLHIENL PDSATEDKLI DCLNDFLLPT
501: GIKPQRSKPC LSCTINREKR QAFVEFLTPE DATAALSFDG RSLNGSTLRI RRPKEYVETV NVTPKKPAEE TALISDVVAD SPHKIFIAGI AGVISSEMLM
601: EIVSAFGPLA AYRFLFNSEL GGPCAFLEYA DRSITSKACA GLNGMMLGGC VLTAVHVFPN PPVEAANEAS PFYGIPENAK SLLKEPTKVL QLKNTFEREE
701: YMLLSKSELE ETLEDVRVEC TRFGAVKSVH VVEYPAGGGS AAEDNTVELK IECTEFADTE NIAKAVSEYS VPINQSIDVL NHSEASETKD VDPIPESQDH
801: KDKHLPSNAA LCECKAPVAD EDAELDETQS RAALPTSQHA EVGHTEAAVD ENKHTGAGEV TATVMDDDAV EKSHQDPRTS ETCSPAEPTD KVEKPGSADD
901: VTENRPEKVP AVETSDTGFV FEPGSVLVEF MRKEAACIAA HSLHGRRFGN RTVHAGYAPY DLYLQKYPR
101: IPRENPKKED TRYAPKEVSK KDNSRDRPNT GAKMDDLKDA PKVPEKEGLG DAPKKASKKQ RPSGDDNHSV RKDKDIHHSQ KLVTNMSGRA DESKDRNLSE
201: IRERKGDVMR SEYQKEPGKR WNDEAVGDDK IKFKSEKLRN ETKRKDRSFD NERSPEVDRP MSKKQDSAWF QDSKHSDRYA GRNEYAKPYH GEPGFKRRRS
301: RSRDHDRERY GRSISPPLRE ERYNYRGRDF GNYPPHYSME KSRRKYAEVD KQKLSGSGGY IGGSHQKYES RLGGYSPRKK KTSLQAEQAT TKTPSKVIQS
401: PEKKSATWDQ PPVKANQSNF PTTFLPTVGQ MAPIPFSFST IKKDPSTTVE TMLVGNSLTA DSVQLTQATR PLRRLHIENL PDSATEDKLI DCLNDFLLPT
501: GIKPQRSKPC LSCTINREKR QAFVEFLTPE DATAALSFDG RSLNGSTLRI RRPKEYVETV NVTPKKPAEE TALISDVVAD SPHKIFIAGI AGVISSEMLM
601: EIVSAFGPLA AYRFLFNSEL GGPCAFLEYA DRSITSKACA GLNGMMLGGC VLTAVHVFPN PPVEAANEAS PFYGIPENAK SLLKEPTKVL QLKNTFEREE
701: YMLLSKSELE ETLEDVRVEC TRFGAVKSVH VVEYPAGGGS AAEDNTVELK IECTEFADTE NIAKAVSEYS VPINQSIDVL NHSEASETKD VDPIPESQDH
801: KDKHLPSNAA LCECKAPVAD EDAELDETQS RAALPTSQHA EVGHTEAAVD ENKHTGAGEV TATVMDDDAV EKSHQDPRTS ETCSPAEPTD KVEKPGSADD
901: VTENRPEKVP AVETSDTGFV FEPGSVLVEF MRKEAACIAA HSLHGRRFGN RTVHAGYAPY DLYLQKYPR
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.