CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91800
EER95096
EER97813
EER99208
EES01601
KXG22269
KXG36793
OQU80770

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	EES01601	AT1G28360.1	21798944
AT4G36690.1	KXG22269	AT1G28360.1	21798944
AT4G36690.1	EER97813	AT2G39760.1	21798944
AT4G36690.1	EER91800	AT3G50670.1	21798944
AT4G36690.1	EER95096	AT3G50670.1	21798944
AT4G36690.1	KXG36793	AT5G49400.1	21798944
AT4G36690.1	EER99208	AT5G51910.1	21798944
AT4G36690.1	OQU80770	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048777_P007	Maize	nucleus	79.83	80.1
CDY12868	Canola	mitochondrion	29.67	78.07
PGSC0003DMT400040069	Potato	cytosol	40.33	77.81
HORVU5Hr1G090000.2	Barley	nucleus	50.67	76.57
CDY67096	Canola	mitochondrion	31.5	76.52
Zm00001d007632_P003	Maize	nucleus	80.17	76.47
Os11t0636900-02	Rice	nucleus	72.17	75.44
EES08974	Sorghum	nucleus	67.67	74.5
TraesCS4A01G165000.4	Wheat	nucleus	71.67	73.5
TraesCS4B01G145600.4	Wheat	nucleus	69.5	73.29
TraesCS4D01G150000.4	Wheat	nucleus	69.67	72.95
GSMUA_Achr4P16510_001	Banana	nucleus	56.83	72.25
CDX75589	Canola	mitochondrion	42.67	72.11
Bra040973.1-P	Field mustard	nucleus	31.83	70.22
HORVU4Hr1G038850.14	Barley	nucleus	69.0	68.43
VIT_04s0023g01450.t01	Wine grape	nucleus	63.67	67.61
AT1G60830.2	Thale cress	nucleus	12.5	67.57
GSMUA_Achr4P11020_001	Banana	nucleus	64.67	67.36
CDY35472	Canola	nucleus	57.5	62.73
CDY55407	Canola	nucleus	11.67	62.5
CDY40481	Canola	nucleus	53.67	62.4
PGSC0003DMT400033041	Potato	nucleus	57.67	62.23
Solyc02g085570.2.1	Tomato	nucleus	57.67	62.01
CDY24773	Canola	nucleus	56.83	61.55
Bra010569.1-P	Field mustard	nucleus	56.83	61.55
Solyc02g062920.2.1	Tomato	nucleus	57.33	61.43
CDY40492	Canola	nucleus	15.33	61.33
CDY12869	Canola	nucleus	50.5	61.09
TraesCS5A01G366000.1	Wheat	nucleus	61.5	60.89
HORVU5Hr1G089980.2	Barley	nucleus, plastid	57.5	60.63
AT1G60900.1	Thale cress	nucleus	59.33	60.44
AT4G36690.1	Thale cress	nucleus	57.67	60.38
VIT_13s0139g00410.t01	Wine grape	cytosol	6.83	60.29
Bra027119.1-P	Field mustard	nucleus	49.17	60.08
KRH64800	Soybean	nucleus	60.0	60.0
KRH56450	Soybean	nucleus	60.33	59.83
TraesCS5D01G375600.1	Wheat	nucleus	59.5	58.43
Bra040940.1-P	Field mustard	nucleus	53.67	57.3
Bra031477.1-P	Field mustard	nucleus	56.33	56.9
CDY46188	Canola	nucleus	56.33	56.9
CDY03767	Canola	nucleus	56.83	56.18
CDY30313	Canola	nucleus	54.83	55.95
CDY66742	Canola	nucleus	52.83	55.91
CDY40493	Canola	nucleus	26.0	55.52
Solyc12g008750.1.1	Tomato	nucleus	55.17	54.53
TraesCS5B01G368400.1	Wheat	nucleus	57.17	54.44
PGSC0003DMT400000919	Potato	nucleus	54.67	54.21
CDY55589	Canola	mitochondrion	22.17	52.99
Bra031341.1-P	Field mustard	nucleus	22.0	52.59
Bra010656.1-P	Field mustard	mitochondrion, plastid	22.17	52.57
KXG29128	Sorghum	nucleus	49.83	47.24
TraesCS2A01G122400.1	Wheat	nucleus	12.33	45.4
TraesCS2B01G144600.1	Wheat	nucleus	12.17	44.79
TraesCS5B01G041900.1	Wheat	nucleus	12.33	44.58
TraesCS5A01G040700.1	Wheat	cytosol	11.83	42.77
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.17	35.26
TraesCS5D01G071700.1	Wheat	nucleus	10.0	34.88
TraesCS5D01G071600.1	Wheat	nucleus	10.0	32.09
TraesCS5B01G067400.1	Wheat	nucleus	9.83	31.55
OQU93274	Sorghum	nucleus	18.0	11.15

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	UniProt:A0A1B6PTJ4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KXG28995	ProteinID:KXG28995	ProteinID:KXG28995.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3005G195800
SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI00081ADECE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:68082440..68087676

Molecular Weight (calculated)

66392.1 Da

IEP (calculated)

8.881

GRAVY (calculated)

-0.953

Length

600 amino acids

Sequence
(BLAST)

001: MAAEYDERYQ GNGDTATAEG GHAQAEYAAP AAAVAPAAGG SPPADSKPAG FSDHADGRSS QPQHETQSHD SGSSKSRERD RERDKSKDRE RDRDRGREKE
101: RDRDKDRERG DRDRERDRHH RDRRERSERR EHRDRSDDRD RDRHRDDRDR HRSHDSERRR DRDRDGHRRH RSRSPKSRDR DRDRRSRSRS RSRSKSKRVS
201: GFDQAPPQQA LPIVATGAIP GQLAGVTAPI PGVGVLPNLY NLAGGQFNPL VIQPQAMTQQ ATRHARRVYV GGLPPTANEQ TVAIFFNGVM AAIGGNTAGP
301: GDAVLNVYIN HDKKFAFVEM RSVEEASNAM ALDGIMFEGA PVKVRRPTDY NPSLAAALGP SQPNPNLNLA AVGLTPGSAG GLEGPDRIFV GGLPYYFTEA
401: QVRELLESFG PLRGFDLVKD RETGNSKGYA FCVYQDLNVT DIACAALNGI KMGDKTLTVR RANQGASQPR PEQESILLQA QQQVQMQKLV YQVGGALPTK
501: VVCLTQVVKA DELRDDEAYD DIVEDMREEG HKYGNLVKVV IPRPDPSGAP VAGVGKVFLE YADVEGSTKA KTGMHGRKFD GNQVVAVFYP EDKFAAEQYD

Best Arabidopsis Sequence Match ( AT4G36690.1 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.