Factsheet for PGSC0003DMT400040069

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038558
PGSC0003DMT400062327
PGSC0003DMT400069942
PGSC0003DMT400076408

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	PGSC0003DMT400076408	AT1G28360.1	21798944
AT4G36690.1	PGSC0003DMT400069942	AT2G39760.1	21798944
AT4G36690.1	PGSC0003DMT400038558	AT3G50670.1	21798944
AT4G36690.1	PGSC0003DMT400062327	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040973.1-P	Field mustard	nucleus	63.99	73.16
CDY67096	Canola	mitochondrion	56.91	71.66
CDY12868	Canola	mitochondrion	50.16	68.42
CDX75589	Canola	mitochondrion	76.53	67.04
CDY40492	Canola	nucleus	31.51	65.33
AT1G60830.2	Thale cress	nucleus	22.83	63.96
CDY55407	Canola	nucleus	22.19	61.61
HORVU5Hr1G090000.2	Barley	nucleus	73.63	57.68
PGSC0003DMT400057795	Potato	mitochondrion	50.48	55.67
Solyc02g062920.2.1	Tomato	nucleus	99.36	55.18
GSMUA_Achr4P16510_001	Banana	nucleus	83.6	55.08
CDY55589	Canola	mitochondrion	42.77	52.99
Bra031341.1-P	Field mustard	nucleus	41.8	51.79
Bra010656.1-P	Field mustard	mitochondrion, plastid	41.8	51.38
PGSC0003DMT400033041	Potato	nucleus	90.03	50.36
Bra027119.1-P	Field mustard	nucleus	78.14	49.49
CDY12869	Canola	nucleus	78.78	49.4
VIT_04s0023g01450.t01	Wine grape	nucleus	86.5	47.61
CDY40481	Canola	nucleus	78.78	47.48
CDY35472	Canola	nucleus	81.03	45.82
CDY24773	Canola	nucleus	81.35	45.67
Bra010569.1-P	Field mustard	nucleus	81.35	45.67
GSMUA_Achr4P11020_001	Banana	nucleus	83.92	45.31
TraesCS4D01G143400.3	Wheat	nucleus	79.74	45.17
EES08974	Sorghum	nucleus	79.1	45.14
HORVU4Hr1G029030.3	Barley	nucleus	79.74	45.09
PGSC0003DMT400000919	Potato	nucleus	86.17	44.3
AT4G36690.1	Thale cress	nucleus	81.35	44.15
Bra040940.1-P	Field mustard	nucleus	79.1	43.77
CDY46188	Canola	nucleus	83.6	43.77
Bra031477.1-P	Field mustard	nucleus	83.6	43.77
TraesCS4B01G145600.4	Wheat	nucleus	80.06	43.76
TraesCS4D01G150000.4	Wheat	nucleus	80.39	43.63
AT1G60900.1	Thale cress	nucleus	82.32	43.46
KRH64800	Soybean	nucleus	83.28	43.17
CDY66742	Canola	nucleus	78.46	43.03
TraesCS4A01G171800.3	Wheat	nucleus	80.06	42.86
TraesCSU01G068100.3	Wheat	nucleus	79.74	42.76
TraesCS4A01G165000.4	Wheat	nucleus	80.39	42.73
Os11t0636900-02	Rice	nucleus	78.78	42.68
CDY03767	Canola	nucleus	83.28	42.67
KRH56450	Soybean	nucleus	82.64	42.48
CDY30313	Canola	nucleus	78.14	41.33
CDY40493	Canola	nucleus	37.3	41.28
KXG28995	Sorghum	nucleus	77.81	40.33
HORVU4Hr1G038850.14	Barley	nucleus	78.46	40.33
HORVU5Hr1G089980.2	Barley	nucleus, plastid	73.31	40.07
TraesCS5A01G366000.1	Wheat	nucleus	74.28	38.12
TraesCS2A01G122400.1	Wheat	nucleus	19.94	38.04
TraesCS5D01G375600.1	Wheat	nucleus	74.6	37.97
TraesCS2B01G144600.1	Wheat	nucleus	18.97	36.2
TraesCS5A01G040700.1	Wheat	cytosol	19.29	36.14
TraesCS5B01G368400.1	Wheat	nucleus	72.35	35.71
KXG29128	Sorghum	nucleus	72.67	35.7
TraesCS5B01G041900.1	Wheat	nucleus	18.97	35.54
TraesCS5D01G071700.1	Wheat	nucleus	16.08	29.07
TraesCS5D01G071600.1	Wheat	nucleus	16.4	27.27
TraesCS5B01G067400.1	Wheat	nucleus	15.76	26.2
Zm00001d007635_P004	Maize	nucleus	18.01	7.95

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
UniProt:M1B991	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400015500	PGSC:PGSC0003DMG400015500	EnsemblPlants:PGSC0003DMT400040069
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0002958DD6

Description

Splicing factor U2af large subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG400015500]

Coordinates

chr2:+:21449305..21452195

Molecular Weight (calculated)

33531.6 Da

IEP (calculated)

4.498

GRAVY (calculated)

-0.252

Length

311 amino acids

Sequence
(BLAST)

001: MSAIGGNTAG PGDAVVNVYI NYEKKFAFVE MRSVEEASNA MALDGIIFEG APCKVRRPSD YNPSLAATLG PSQPNPNLNL AAVGLSPGSA GGLEGPDRIF
101: VGGLPYYFTE AQIRELLESF GALRGFDLVK DRETGNSKGY AFCVYQDVSV TDIACAALNG IKMGDKTLTV RRANQGTTQP KPEQESVLLH AQQQIALQRF
201: MLQPGALATK VLCLTQVVEV DELSNDEDYQ DILEDMRTEC GKFGPLVNVV IPRPSPDGEH APGVGKVFLE YGDVESASKA RQSLNGRKFG GNQVVAVFYP
301: ENKFYEGDYD G

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.