Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
- mitochondrion 5
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040069 | Potato | cytosol | 55.67 | 50.48 |
| VIT_00s0561g00030.t01 | Wine grape | cytosol, nucleus, plasma membrane | 60.99 | 34.26 |
| PGSC0003DMT400033041 | Potato | nucleus | 56.74 | 28.78 |
| GSMUA_Achr1P06860_001 | Banana | nucleus | 58.51 | 28.55 |
| PGSC0003DMT400000919 | Potato | nucleus | 55.67 | 25.95 |
| VIT_00s0611g00010.t01 | Wine grape | nucleus | 53.9 | 2.36 |
Protein Annotations
| MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M1C1P3 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400022438 | PGSC:PGSC0003DMG400022438 | EnsemblPlants:PGSC0003DMT400057795 |
| PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF98 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | TIGRFAMs:TIGR01642 | InterPro:U2AF_lg | UniParc:UPI0002960E0C | : | : |
Description
Splicing factor U2af large subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG400022438]
Coordinates
chr2:+:34161613..34169688
Molecular Weight (calculated)
30825.9 Da
IEP (calculated)
4.842
GRAVY (calculated)
-0.279
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MLYCKQGVSV RIRRPTDYNP SLAAALGPGH PSPHLNLAAA GLMPGATGDA EDQDRIFIGG LPYLFTEVQI KELLESFGPL RRFEVVKDRD TGNSKGYGFC
101: TYQNPLDTDM ACASLNGLKM GDKTLTVRRA TSSGQVKSEQ ECILAQARQH IAMQKMAFEA SGMTIPGTEI GPVVTAEIPT KVLCLTEVIT PQELFDDVEY
201: GEILEDMKEE GQKFGDLIDV VIPRPEPDQK MVDGFGKVFL EYSDTIGCTK AKAALGGRKF GGNTAVAIFY PEDKYYKKDY AS
101: TYQNPLDTDM ACASLNGLKM GDKTLTVRRA TSSGQVKSEQ ECILAQARQH IAMQKMAFEA SGMTIPGTEI GPVVTAEIPT KVLCLTEVIT PQELFDDVEY
201: GEILEDMKEE GQKFGDLIDV VIPRPEPDQK MVDGFGKVFL EYSDTIGCTK AKAALGGRKF GGNTAVAIFY PEDKYYKKDY AS
001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
Arabidopsis Description
U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.