Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 9.16 | 67.65 |
| PGSC0003DMT400057795 | Potato | mitochondrion | 34.26 | 60.99 |
| GSMUA_Achr1P06860_001 | Banana | nucleus | 55.98 | 48.62 |
| VIT_04s0023g01450.t01 | Wine grape | nucleus | 53.98 | 47.96 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 11.55 | 37.18 |
| VIT_05s0049g01490.t01 | Wine grape | nucleus | 16.73 | 8.56 |
| VIT_00s0611g00010.t01 | Wine grape | nucleus | 39.84 | 3.1 |
Protein Annotations
| MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | ProteinID:CCB59157 | ProteinID:CCB59157.1 | UniProt:F6HWU3 | EMBL:FN596301 |
| GO:GO:0000243 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008187 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016607 |
| GO:GO:0030628 | GO:GO:0071004 | GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF98 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | TIGRFAMs:TIGR01642 | InterPro:U2AF_lg | UniParc:UPI000210A1EE | ArrayExpress:VIT_00s0561g00030 |
| EnsemblPlantsGene:VIT_00s0561g00030 | EnsemblPlants:VIT_00s0561g00030.t01 | SEG:seg | : | : | : |
Description
U2 snRNP auxiliary factor large subunit [Source:UniProtKB/TrEMBL;Acc:F6HWU3]
Coordinates
chrUn:-:31871393..31893338
Molecular Weight (calculated)
54151.6 Da
IEP (calculated)
7.222
GRAVY (calculated)
0.091
Length
502 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIVVIERGD RDRDHVPVQR IDLETDLNHA LVPVLAQRAN GPVVLTWHHL SLHCCQVPLS QAMLGYMSHC ATHGRGHRRY YVQPGTNAPI SWILFAFNRQ
101: LLPFGELPGV PQMVPGMIQN MFPFGATQLG ALPLMPVQAM TQQATRHARR VYVGGLPPLA NEQTIATFFS QVMTAIGGNS AGPGDAVVNV YINHEKKFAF
201: VEMRSVEEAS NAMALDGIMF EACLTLIFSL VRRPTDYNPS LAAALGPSQP SPHLNLAAVG LMPGVIGGAE GPDRIFVGGL PYYFTEEQIR ELLESFGPLR
301: GFDLVKDRDT GNSKGYGFCV YQDPAVTDIA CAALNGLKMG DKTLTVRRAT VGSGQAKSEQ DNILAQAQQH IAIQKIALQA GGLNLPGAGM AFTAIAETPT
401: KVLCLTEVSS VPKIIYHILY KWIASGILFL LLVHGALVHV VIPRPSPNGD LIPGVGKVFL EYSDTAGSSS ARNALSGRKF GGNVVSAVYY PEDKYYDGDY
501: GA
101: LLPFGELPGV PQMVPGMIQN MFPFGATQLG ALPLMPVQAM TQQATRHARR VYVGGLPPLA NEQTIATFFS QVMTAIGGNS AGPGDAVVNV YINHEKKFAF
201: VEMRSVEEAS NAMALDGIMF EACLTLIFSL VRRPTDYNPS LAAALGPSQP SPHLNLAAVG LMPGVIGGAE GPDRIFVGGL PYYFTEEQIR ELLESFGPLR
301: GFDLVKDRDT GNSKGYGFCV YQDPAVTDIA CAALNGLKMG DKTLTVRRAT VGSGQAKSEQ DNILAQAQQH IAIQKIALQA GGLNLPGAGM AFTAIAETPT
401: KVLCLTEVSS VPKIIYHILY KWIASGILFL LLVHGALVHV VIPRPSPNGD LIPGVGKVFL EYSDTAGSSS ARNALSGRKF GGNVVSAVYY PEDKYYDGDY
501: GA
001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
Arabidopsis Description
U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.