Factsheet for VIT_13s0139g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g01580.t01
VIT_05s0077g01180.t01
VIT_10s0003g00130.t01
VIT_13s0019g02260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	VIT_10s0003g00130.t01	AT1G28360.1	21798944
AT4G36690.1	VIT_13s0019g02260.t01	AT2G39760.1	21798944
AT4G36690.1	VIT_04s0023g01580.t01	AT3G50670.1	21798944
AT4G36690.1	VIT_05s0077g01180.t01	AT5G49400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0139g00390.t01	Wine grape	plasma membrane	70.59	30.77
CDY12868	Canola	mitochondrion	54.41	16.23
CDY67096	Canola	mitochondrion	51.47	14.17
CDY40493	Canola	nucleus	50.0	12.1
CDX75589	Canola	mitochondrion	57.35	10.99
HORVU5Hr1G090000.2	Barley	nucleus	58.82	10.08
VIT_00s0561g00030.t01	Wine grape	cytosol, nucleus, plasma membrane	67.65	9.16
GSMUA_Achr4P16510_001	Banana	nucleus	63.24	9.11
Bra027119.1-P	Field mustard	nucleus	61.76	8.55
CDY12869	Canola	nucleus	61.76	8.47
CDY40481	Canola	nucleus	61.76	8.14
VIT_04s0023g01450.t01	Wine grape	nucleus	64.71	7.79
TraesCS4D01G143400.3	Wheat	nucleus	61.76	7.65
HORVU4Hr1G029030.3	Barley	nucleus	61.76	7.64
CDY35472	Canola	nucleus	61.76	7.64
CDY24773	Canola	nucleus	61.76	7.58
Bra010569.1-P	Field mustard	nucleus	61.76	7.58
EES08974	Sorghum	nucleus	60.29	7.52
Bra040940.1-P	Field mustard	nucleus	61.76	7.47
CDY66742	Canola	nucleus	61.76	7.41
TraesCS4B01G145600.4	Wheat	nucleus	61.76	7.38
AT4G36690.1	Thale cress	nucleus	61.76	7.33
AT1G60900.1	Thale cress	nucleus	63.24	7.3
GSMUA_Achr4P11020_001	Banana	nucleus	61.76	7.29
TraesCSU01G068100.3	Wheat	nucleus	61.76	7.24
CDY46188	Canola	nucleus	63.24	7.24
Bra031477.1-P	Field mustard	nucleus	63.24	7.24
TraesCS4A01G171800.3	Wheat	nucleus	61.76	7.23
TraesCS4D01G150000.4	Wheat	nucleus	60.29	7.16
CDY30313	Canola	nucleus	61.76	7.14
HORVU5Hr1G089980.2	Barley	nucleus, plastid	58.82	7.03
TraesCS4A01G165000.4	Wheat	nucleus	60.29	7.01
Os11t0636900-02	Rice	nucleus	58.82	6.97
CDY03767	Canola	nucleus	61.76	6.92
KXG28995	Sorghum	nucleus	60.29	6.83
HORVU4Hr1G038850.14	Barley	nucleus	60.29	6.78
KXG29128	Sorghum	nucleus	58.82	6.32
TraesCS5A01G366000.1	Wheat	nucleus	55.88	6.27
TraesCS5D01G375600.1	Wheat	nucleus	55.88	6.22
TraesCS5B01G368400.1	Wheat	nucleus	57.35	6.19
TraesCS5B01G041900.1	Wheat	nucleus	14.71	6.02
TraesCS5D01G071700.1	Wheat	nucleus	11.76	4.65
AT1G60830.2	Thale cress	nucleus	7.35	4.5
CDY55407	Canola	nucleus	7.35	4.46
TraesCS5A01G040700.1	Wheat	cytosol	10.29	4.22
CDY40492	Canola	nucleus	7.35	3.33
Bra040973.1-P	Field mustard	nucleus	13.24	3.31
TraesCS5B01G067400.1	Wheat	nucleus	8.82	3.21
TraesCS2B01G144600.1	Wheat	nucleus	7.35	3.07
TraesCS2A01G122400.1	Wheat	nucleus	7.35	3.07
TraesCS5D01G071600.1	Wheat	nucleus	7.35	2.67
Bra031341.1-P	Field mustard	nucleus	7.35	1.99
CDY55589	Canola	mitochondrion	7.35	1.99
Bra010656.1-P	Field mustard	mitochondrion, plastid	7.35	1.98
VIT_05s0049g01490.t01	Wine grape	nucleus	27.94	1.94
VIT_00s0611g00010.t01	Wine grape	nucleus	8.82	0.09

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB58679	ProteinID:CCB58679.1	UniProt:F6HVG6	EMBL:FN596255
GO:GO:0003674	GO:GO:0003676	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0015079	GO:GO:0016020	GO:GO:0071805	InterPro:IPR012677
InterPro:K+_transporter	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF02705	PANTHER:PTHR23139	PANTHER:PTHR23139:SF98	InterPro:RBD_domain_sf
SUPFAM:SSF54928	UniParc:UPI0002109F2A	ArrayExpress:VIT_13s0139g00410	EnsemblPlantsGene:VIT_13s0139g00410	EnsemblPlants:VIT_13s0139g00410.t01	:

Description

No Description!

Coordinates

chr13:+:20697124..20697872

Molecular Weight (calculated)

7223.7 Da

IEP (calculated)

4.287

GRAVY (calculated)

0.356

Length

68 amino acids

Sequence
(BLAST)

1: MTAIGGNSAG PSDAVVNVYI DHEKKFALVE MRSVEQASNA MELGGILLCI TSSEAMFSDL GHFLYTAI

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.