Factsheet for HORVU5Hr1G090000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G030660.5
HORVU1Hr1G046870.5
HORVU1Hr1G067160.1
HORVU2Hr1G064920.1
HORVU5Hr1G080210.1
HORVU5Hr1G117990.1
HORVU7Hr1G097780.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	HORVU1Hr1G067160.1	AT1G28360.1	21798944
AT4G36690.1	HORVU2Hr1G064920.1	AT2G39760.1	21798944
AT4G36690.1	HORVU1Hr1G030660.5	AT3G50670.1	21798944
AT4G36690.1	HORVU1Hr1G046870.5	AT3G50670.1	21798944
AT4G36690.1	HORVU7Hr1G097780.1	AT5G49400.1	21798944
AT4G36690.1	HORVU5Hr1G080210.1	AT5G51910.1	21798944
AT4G36690.1	HORVU5Hr1G117990.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67096	Canola	mitochondrion	46.6	74.9
CDY12868	Canola	mitochondrion	42.32	73.68
PGSC0003DMT400040069	Potato	cytosol	57.68	73.63
HORVU5Hr1G089980.2	Barley	nucleus, plastid	99.5	69.42
CDX75589	Canola	mitochondrion	61.71	69.01
AT1G60830.2	Thale cress	nucleus	18.14	64.86
Bra040973.1-P	Field mustard	nucleus	44.08	64.34
GSMUA_Achr4P16510_001	Banana	nucleus	72.29	60.81
TraesCS5A01G366000.1	Wheat	nucleus	92.7	60.73
CDY55407	Canola	nucleus	17.13	60.71
TraesCS5D01G375600.1	Wheat	nucleus	91.94	59.74
VIT_13s0139g00410.t01	Wine grape	cytosol	10.08	58.82
TraesCS5B01G368400.1	Wheat	nucleus	89.92	56.67
CDY40492	Canola	nucleus	21.16	56.0
HORVU4Hr1G029030.3	Barley	nucleus	76.83	55.45
Bra027119.1-P	Field mustard	nucleus	67.76	54.79
CDY12869	Canola	nucleus	67.76	54.23
Zm00001d048777_P007	Maize	nucleus	77.58	51.51
CDY40481	Canola	nucleus	66.5	51.16
CDY40493	Canola	nucleus	36.02	50.89
CDY35472	Canola	nucleus	70.28	50.73
CDY24773	Canola	nucleus	70.78	50.72
Bra010569.1-P	Field mustard	nucleus	70.78	50.72
KXG28995	Sorghum	nucleus	76.57	50.67
HORVU4Hr1G038850.14	Barley	nucleus	77.08	50.58
VIT_04s0023g01450.t01	Wine grape	nucleus	71.54	50.27
GSMUA_Achr4P11020_001	Banana	nucleus	72.54	50.0
PGSC0003DMT400033041	Potato	nucleus	70.03	50.0
Solyc02g085570.2.1	Tomato	nucleus	69.77	49.64
AT4G36690.1	Thale cress	nucleus	71.54	49.56
Solyc02g062920.2.1	Tomato	nucleus	68.77	48.75
CDY55589	Canola	mitochondrion	30.73	48.61
AT1G60900.1	Thale cress	nucleus	70.78	47.71
Zm00001d007632_P003	Maize	nucleus	75.31	47.54
Bra010656.1-P	Field mustard	mitochondrion, plastid	30.23	47.43
Bra031341.1-P	Field mustard	nucleus	29.97	47.41
CDY46188	Canola	nucleus	70.78	47.31
Bra031477.1-P	Field mustard	nucleus	70.78	47.31
Bra040940.1-P	Field mustard	nucleus	66.0	46.62
CDY03767	Canola	nucleus	70.78	46.29
PGSC0003DMT400000919	Potato	nucleus	70.53	46.28
KRH64800	Soybean	nucleus	69.77	46.17
Solyc12g008750.1.1	Tomato	nucleus	70.53	46.13
KRH56450	Soybean	nucleus	70.03	45.95
CDY66742	Canola	nucleus	65.24	45.68
CDY30313	Canola	nucleus	66.5	44.9
VIT_13s0139g00390.t01	Wine grape	plasma membrane	12.85	32.69

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G090000	EnsemblPlants:HORVU5Hr1G090000.2
InterPro:IPR000504	InterPro:IPR012677	UniProt:M0V209	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0002963443	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:-:585846898..585848982

Molecular Weight (calculated)

42829.8 Da

IEP (calculated)

4.562

GRAVY (calculated)

-0.285

Length

397 amino acids

Sequence
(BLAST)

001: MSGFDQGPSE AIHRPAPAAT PGQLPELPAA NPGMFPNMLP NMFNLPGLGQ PLAMTQQATR HARRVYVGGL PPIANEQTVA LFFNQVMAAI GGNTSGLGDA
101: VVNVYINHDK KFAFVEMRSV EEASNAMALD GIMFEGAPVK VRRPTDYNPS QAATLGPSQP SPNLNLAAVG LTPGAGGGLE GPDRIFVGGL PYYFTEAQVR
201: ELLETFGPLR GFDIVKDKET GNSKGYAFCL YQDVTVTDIA CAALNGIQLG DRTLTVRRAN QGAEPRPEQE NILLQAQQEA QMKRLVYEVG GALPTKVVCL
301: TDVVSADDLR DDEEYNDILE DMTLEARKYG NLVQAVIPRP HPSGDPVAGA GKVFLEYADL ESSSRARMGM HGRKFDGKET VAVFYPEDKF GEGDYDY

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.